| The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows BD O'Connor, D Yuen, V Chung, AG Duncan, XK Liu, J Patricia, B Paten, ... F1000Research 6, 2017 | 87 | 2017 |
| JBrowse 2: a modular genome browser with views of synteny and structural variation C Diesh, GJ Stevens, P Xie, T De Jesus Martinez, EA Hershberg, A Leung, ... Genome biology 24 (1), 74, 2023 | 84 | 2023 |
| A flexible repertoire of transcription factor binding sites and a diversity threshold determines enhancer activity in embryonic stem cells G Singh, S Mullany, SD Moorthy, R Zhang, T Mehdi, R Tian, AG Duncan, ... Genome Research 31 (4), 564-575, 2021 | 41 | 2021 |
| The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols D Yuen, L Cabansay, A Duncan, G Luu, G Hogue, C Overbeck, N Perez, ... Nucleic acids research 49 (W1), W624-W632, 2021 | 17 | 2021 |
| Improving the performance of supervised deep learning for regulatory genomics using phylogenetic augmentation AG Duncan, JA Mitchell, AM Moses Bioinformatics 40 (4), btae190, 2024 | 1 | 2024 |
| Functional similarity of non-coding regions is revealed in phylogenetic average motif score representations A Alam, AG Duncan, JA Mitchell, AM Moses bioRxiv, 2023.04. 09.536185, 2023 | 1 | 2023 |
| Dockstore 2.0: Enhancing a community platform for sharing cloud-agnostic research tools D Yuen, B O’Connor, C Sloan, D Steinberg, N Perez, W Shands, G Luu, ... F1000 Research Limited.[version 1, 2019 | 1 | 2019 |
| A Proximal Sox2 Enhancer Cluster is Required for the Anterior Regional Identity of Neural Progenitors IC Tobias, SD Moorthy, VM Shchuka, L Langroudi, ZE Gillespie, ... bioRxiv, 2023.11. 09.566464, 2023 | | 2023 |
| JBrowse-Modernizing a JavaScript Genome Browser for the Next Generation of Bioinformatics S Cain, R Buels, CM Diesh, E Yao, G Stevens, S Dider, A Duncan, L Stein, ... Plant and Animal Genome XXVII Conference (January 12-16, 2019), 0 | | |
