Marcel H Schulz

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Martin VingronMax-Planck-Institut für molekulare GenetikVerified email at molgen.mpg.de
Florian SchmidtImmunoScapeVerified email at immunoscape.com
Peter RobinsonBerlin Institute of Health, Charité - Universitätsmedizin, Berlin, GermanyVerified email at bih-charite.de
Sebastian BauerVerified email at sebastianbauer.info
Sebastian KöhlerExpert AI engineer, Ada Health; Member of Monarch InitiativeVerified email at ada.com
Hugues RichardRobert Koch Institute (Researcher) / Sorbonne University (Ass. Prof., on leave)Verified email at upmc.fr
Markus ListData Science in Systems Biology, School of Life Sciences, Technical University of MunichVerified email at tum.de
Martin SimonProfessor Molecular Cell BiologyVerified email at uni-wuppertal.de
Karl JV NordströmAstraZeneca ABVerified email at astrazeneca.com
Ziv Bar-JosephProfessor of Computational Biology and Machine Learning, School of Computer Science, Carnegie Mellon UniversityVerified email at andrew.cmu.edu
Jörn WalterProfessor of Genetics & Epigenetics, Saarland UniveristyVerified email at mx.uni-saarland.de
Dr. Marc SultanRocheVerified email at roche.com
Gilles GasparoniUniversität des SaarlandesVerified email at mx.uni-saarland.de
Kai YeXi'an Jiaotong UniversityVerified email at xjtu.edu.cn
Sonja M. KesslerInstitute of Pharmacy, Experimental Pharmacology for Natural Sciences, Martin Luther UniversityVerified email at pharmazie.uni-halle.de
David WeeseD4L data4life gGmbHVerified email at data4life.care
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
Daniel ZerbinoMosaic TherapeuticsVerified email at mosaic-tx.com
Sivarajan KarunanithiBioinformatician at IMB gGmbHVerified email at imb-mainz.de
Knut ReinertFU Berlin / MPI MolgenVerified email at fu-berlin.de

Marcel H Schulz

Professor of Computational Biology, Goethe University Frankfurt, Germany

Verified email at em.uni-frankfurt.de - Homepage

Epigenomics Data Science Gene Regulation Single Cell Analysis Machine Learning Computer Science


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Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads K Ye, MH Schulz, Q Long, R Apweiler, Z Ning Bioinformatics 25 (21), 2865-2871, 2009	2299	2009
Oases: Robust de novo RNA-seq assembly across the dynamic range of expression levels MH Schulz, DR Zerbino, M Vingron, E Birney Bioinformatics, 2012	1735	2012
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome M Sultan, MH Schulz, H Richard, A Magen, A Klingenhoff, M Scherf, ... Science 321 (5891), 956-960, 2008	1601	2008
Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013	792	2013
Clinical diagnostics in human genetics with semantic similarity searches in ontologies S Köhler, MH Schulz, P Krawitz, S Bauer, S Dölken, CE Ott, C Mundlos, ... The American Journal of Human Genetics 85 (4), 457-464, 2009	573	2009
The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery HG Stunnenberg, M Hirst, International Human Epigenome Consortium Cell 167 (5), 1145-1149, 2016	546	2016
Identification of transcription factor binding sites using ATAC-seq Z Li, MH Schulz, T Look, M Begemann, M Zenke, IG Costa Genome biology 20, 1-21, 2019	444	2019
Single cell sequencing reveals endothelial plasticity with transient mesenchymal activation after myocardial infarction LS Tombor, D John, SF Glaser, G Luxán, E Forte, M Furtado, N Rosenthal, ... Nature communications 12 (1), 681, 2021	213	2021
Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments H Richard, MH Schulz, M Sultan, A Nürnberger, S Schrinner, D Balzereit, ... Nucleic Acids Research 38 (10), e112-e112, 2010	209	2010
Epigenomic Profiling of Human CD4+ T Cells Supports a Linear Differentiation Model and Highlights Molecular Regulators of Memory Development P Durek, K Nordström, G Gasparoni, A Salhab, C Kressler, M de Almeida, ... Immunity 45 (5), 1148-1161, 2016	204	2016
Mapping translocation breakpoints by next-generation sequencing W Chen, V Kalscheuer, A Tzschach, C Menzel, R Ullmann, MH Schulz, ... Genome research 18 (7), 1143-1149, 2008	174	2008
DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data MH Schulz, WE Devanny, A Gitter, S Zhong, J Ernst, Z Bar-Joseph BMC Systems Biology 6 (1), 104, 2012	151	2012
Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction F Schmidt, N Gasparoni, G Gasparoni, K Gianmoena, C Cadenas, ... Nucleic acids research 45 (1), 54-66, 2017	114	2017
Probabilistic error correction for RNA sequencing HS Le, MH Schulz, BM McCauley, VF Hinman, Z Bar-Joseph Nucleic acids research 41 (10), e109-e109, 2013	111	2013
Fiona: a parallel and automatic strategy for read error correction MH Schulz, D Weese, M Holtgrewe, V Dimitrova, S Niu, K Reinert, ... Bioinformatics 30 (17), i356-i363, 2014	97	2014
The lncRNA Locus Handsdown Regulates Cardiac Gene Programs and Is Essential for Early Mouse Development N Ritter, T Ali, N Kopitchinski, P Schuster, A Beisaw, DA Hendrix, ... Developmental cell 50 (5), 644-657. e8, 2019	86	2019
Analysis of cell type-specific effects of microRNA-92a provides novel insights into target regulation and mechanism of action EM Rogg, WT Abplanalp, C Bischof, D John, MH Schulz, J Krishnan, ... Circulation 138 (22), 2545-2558, 2018	79	2018
Detecting genomic indel variants with exact breakpoints in single-and paired-end sequencing data using SplazerS AK Emde, MH Schulz, D Weese, R Sun, M Vingron, VM Kalscheuer, ... Bioinformatics, 2012	79	2012
Bayesian Ontology Querying for Accurate and Noise-Tolerant Semantic Searches S Bauer, S Köhler, MH Schulz, PN Robinson Bioinformatics, 2012	78	2012
Reconstructing dynamic microRNA-regulated interaction networks MH Schulz, KV Pandit, CL Lino Cardenas, N Ambalavanan, N Kaminski, ... Proceedings of the National Academy of Sciences 110 (39), 15686-15691, 2013	76	2013

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