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Danang Crysnanto
Danang Crysnanto
Senior Data Scientist, Bioinformatics, AstraZeneca
Verified email at astrazeneca.com
Title
Cited by
Cited by
Year
Assessing genomic diversity and signatures of selection in Original Braunvieh cattle using whole-genome sequencing data
M Bhati, NK Kadri, D Crysnanto, H Pausch
BMC genomics 21, 1-14, 2020
552020
Novel functional sequences uncovered through a bovine multiassembly graph
D Crysnanto, AS Leonard, ZH Fang, H Pausch
Proceedings of the National Academy of Sciences 118 (20), e2101056118, 2021
502021
Bovine breed-specific augmented reference graphs facilitate accurate sequence read mapping and unbiased variant discovery
D Crysnanto, H Pausch
Genome Biology 21 (184), 1-27, 2020
492020
Bovine breed-specific augmented reference graphs facilitate accurate sequence read mapping and unbiased variant discovery
D Crysnanto, H Pausch
BioRxiv, 2019.12. 20.882423, 2020
492020
Activation of cryptic splicing in bovine WDR19 is associated with reduced semen quality and male fertility
M Hiltpold, G Niu, NK Kadri, D Crysnanto, ZH Fang, M Spengeler, ...
PLoS genetics 16 (5), e1008804, 2020
292020
Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assemblies
AS Leonard, D Crysnanto, ZH Fang, MP Heaton, BL Vander Ley, ...
Nature Communications 13 (1), 3012, 2022
262022
Accurate sequence variant genotyping in cattle using variation-aware genome graphs
D Crysnanto, C Wurmser, H Pausch
Genetics Selection Evolution 51 (1), 21, 2019
262019
Characterization of a haplotype-reference panel for genotyping by low-pass sequencing in Swiss Large White pigs
A Nosková, M Bhati, NK Kadri, D Crysnanto, S Neuenschwander, A Hofer, ...
BMC genomics 22, 1-14, 2021
182021
Widespread gene duplication and adaptive evolution in the RNA interference pathways of the Drosophila obscura group
D Crysnanto, DJ Obbard
BMC evolutionary biology 19, 1-12, 2019
142019
Graph construction method impacts variation representation and analyses in a bovine super-pangenome
AS Leonard, D Crysnanto, XM Mapel, M Bhati, H Pausch
Genome Biology 24 (1), 124, 2023
132023
A 63‐bp insertion in exon 2 of the porcine KIF21A gene is associated with arthrogryposis multiplex congenita
ZH Fang, A Nosková, D Crysnanto, S Neuenschwander, P Vögeli, ...
Animal genetics 51 (5), 820-823, 2020
72020
Deletion of porcine BOLL is associated with defective acrosomes and subfertility in Yorkshire boars
A Nosková, C Wurmser, D Crysnanto, A Sironen, P Uimari, R Fries, ...
Animal genetics 51 (6), 945-949, 2020
62020
Comparison of methods for building pangenome graphs
D Crysnanto, A Leonard, H Pausch
Proceedings of 12th World Congress on Genetics Applied to Livestock …, 2022
32022
Structural variation and introgression from wild populations in East Asian cattle genomes confer adaptation to local environment
X Xia, F Zhang, S Li, X Luo, L Peng, Z Dong, H Pausch, AS Leonard, ...
Genome Biology 24 (1), 211, 2023
22023
Sequence read mapping and variant discovery from bovine breed-specific augmented reference graphs
D Crysnanto, H Pausch
bioRxiv, 2019
22019
Establishing a Bovine Pangenome from Multiple Haplotype-Resolved Assemblies
A Leonard, D Crysnanto, Z Fang, MP Heaton, BL Vander Ley, C Herrera, ...
Plant and Animal Genome XXIX Conference (January 8-12, 2022), 2022
2022
Deciphering the genomic architecture and patterns of selection in Swiss cattle breeds
M Bhati, NK Kadri, D Crysnanto, H Pausch
Book of Abstracts of the 72nd Annual Meeting of the European Federation of …, 2021
2021
En route to routine genotyping by low-pass sequencing in Swiss pig breeds
A Poublan-Couzardot, M Bhati, NK Kadri, D Crysnanto, ...
Book of Abstracts of the 72nd Annual Meeting of the European Federation of …, 2021
2021
Establishing Bovine Pangenome Graphs
D Crysnanto
ETH Zurich, 2021
2021
Mapping Sequencing Reads to Bovine Breed-Specific Genome Graphs
D Crysnanto, H Pausch
Online Abstracts: International Plant and Animal Genomes XXVIII Conference …, 2020
2020
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