| HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins ZL Brumme, M John, JM Carlson, CJ Brumme, D Chan, MA Brockman, ... PLoS One 4 (8), e6687, 2009 | 198 | 2009 |
| Deep sequencing to infer HIV-1 co-receptor usage: application to three clinical trials of maraviroc in treatment-experienced patients LC Swenson, T Mo, WWY Dong, X Zhong, CK Woods, MA Jensen, ... Journal of Infectious Diseases 203 (2), 237-245, 2011 | 178 | 2011 |
| Deep V3 sequencing for HIV type 1 tropism in treatment-naive patients: a reanalysis of the MERIT trial of maraviroc LC Swenson, T Mo, WWY Dong, X Zhong, CK Woods, A Thielen, ... Clinical infectious diseases 53 (7), 732-742, 2011 | 110 | 2011 |
| HIV drug resistance detected during low-level viraemia is associated with subsequent virologic failure LC Swenson, JE Min, CK Woods, E Cai, JZ Li, JSG Montaner, ... AIDS 28 (8), 1125-1134, 2014 | 106 | 2014 |
| Performance of HIV-1 Drug Resistance Testing at Low Level Viraemia and Its Ability to Predict Future Virologic Outcomes and Viral Evolution in Treatment-Naïve Individuals A Gonzalez-Serna, JE Min, C Woods, D Chan, V Lima, JSG Montaner, ... Clinical Infectious Diseases 58 (8), 1165-1173, 2014 | 99 | 2014 |
| Improved detection of CXCR4-using HIV by V3 genotyping: application of population-based and “deep” sequencing to plasma RNA and proviral DNA LC Swenson, A Moores, AJ Low, A Thielen, W Dong, C Woods, ... JAIDS Journal of Acquired Immune Deficiency Syndromes 54 (5), 506-510, 2010 | 99 | 2010 |
| Detection of inferred CCR5-and CXCR4-using HIV-1 variants and evolutionary intermediates using ultra-deep pyrosequencing EM Bunnik, LC Swenson, D Edo-Matas, W Huang, W Dong, A Frantzell, ... PLoS pathogens 7 (6), e1002106, 2011 | 83 | 2011 |
| Phylogenetic analysis of population-based and deep sequencing data to identify coevolving sites in the nef gene of HIV-1 AFY Poon, LC Swenson, WWY Dong, W Deng, SL Kosakovsky Pond, ... Molecular biology and evolution 27 (4), 819-832, 2010 | 83* | 2010 |
| Comparative performances of HIV-1 RNA load assays at low viral load levels: results of an international collaboration LC Swenson, B Cobb, AM Geretti, PR Harrigan, M Poljak, ... Journal of clinical microbiology 52 (2), 517-523, 2014 | 78 | 2014 |
| Reconstructing the dynamics of HIV evolution within hosts from serial deep sequence data AFY Poon, LC Swenson, EM Bunnik, D Edo-Matas, H Schuitemaker, ... PLOS Computational Biology 8 (11), e1002753, 2012 | 62 | 2012 |
| Use of cellular HIV DNA to predict virologic response to maraviroc: performance of population-based and deep sequencing LC Swenson, WWY Dong, T Mo, J Demarest, D Chapman, S Ellery, ... Clinical infectious diseases 56 (11), 1659-1666, 2013 | 45 | 2013 |
| Next-generation sequencing to assess HIV tropism LC Swenson, M Däumer, R Paredes Current opinion in HIV and AIDS 7 (5), 478-485, 2012 | 44 | 2012 |
| HIV coreceptor phenotyping in the clinical setting. AJ Low, LC Swenson, PR Harrigan AIDS reviews 10 (3), 143-151, 2008 | 40 | 2008 |
| Maraviroc, as a Switch Option, in HIV-1–infected Individuals With Stable, Well-controlled HIV Replication and R5-tropic Virus on Their First Nucleoside/Nucleotide Reverse … SL Pett, J Amin, A Horban, J Andrade-Villanueva, M Losso, N Porteiro, ... Clinical Infectious Diseases 63 (1), 122-132, 2016 | 33 | 2016 |
| Genotypic analysis of the V3 region of HIV from virologic nonresponders to maraviroc-containing regimens reveals distinct patterns of failure LC Swenson, CKS Chui, CJ Brumme, D Chan, CK Woods, T Mo, W Dong, ... Antimicrobial agents and chemotherapy 57 (12), 6122-6130, 2013 | 32 | 2013 |
| Prolonged and substantial discordance in prevalence of raltegravir-resistant HIV-1 in plasma versus PBMC samples revealed by 454 “deep” sequencing GQ Lee, LC Swenson, AFY Poon, JN Martin, H Hatano, SG Deeks, ... Public Library of Science 7 (9), e46181, 2012 | 32 | 2012 |
| Theoretical and experimental assessment of degenerate primer tagging in ultra-deep applications of next-generation sequencing RH Liang, T Mo, W Dong, GQ Lee, LC Swenson, RM McCloskey, ... Nucleic Acids Research 42 (12), e98-e98, 2014 | 30 | 2014 |
| Genotypic inference of HIV-1 tropism using population-based sequencing of V3 RA McGovern, PR Harrigan, LC Swenson JoVE (Journal of Visualized Experiments), e2531, 2010 | 29 | 2010 |
| A single untimed plasma drug concentration measurement during low-level HIV viremia predicts virologic failure A Gonzalez-Serna, LC Swenson, B Watson, W Zhang, A Nohpal, ... Clinical Microbiology and Infection 22 (12), 1004. e9-1004. e16, 2016 | 27 | 2016 |
| Quantification of HIV tropism by “deep” sequencing shows a broad distribution of prevalence of X4 variants in clinical samples that is associated with virological outcome L Swenson, W Dong, T Mo, C Woods, A Thielen, M Jensen, C Glascock, ... 16th Conference on Retroviruses and Opportunistic Infections, 8-11, 2009 | 26 | 2009 |
Art FY PoonWestern UniversityVerified email at uwo.ca
