Luke C Swenson, MD, PhD
Luke C Swenson, MD, PhD
Verified email at mail.utoronto.ca - Homepage
Title
Cited by
Cited by
Year
HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins
ZL Brumme, M John, JM Carlson, CJ Brumme, D Chan, MA Brockman, ...
PLoS One 4 (8), e6687, 2009
1822009
Deep sequencing to infer HIV-1 co-receptor usage: application to three clinical trials of maraviroc in treatment-experienced patients
LC Swenson, T Mo, WWY Dong, X Zhong, CK Woods, MA Jensen, ...
Journal of Infectious Diseases 203 (2), 237-245, 2011
1682011
Deep V3 sequencing for HIV type 1 tropism in treatment-naive patients: a reanalysis of the MERIT trial of maraviroc
LC Swenson, T Mo, WWY Dong, X Zhong, CK Woods, A Thielen, ...
Clinical infectious diseases 53 (7), 732-742, 2011
1062011
Improved detection of CXCR4-using HIV by V3 genotyping: application of population-based and “deep” sequencing to plasma RNA and proviral DNA
LC Swenson, A Moores, AJ Low, A Thielen, W Dong, C Woods, ...
JAIDS Journal of Acquired Immune Deficiency Syndromes 54 (5), 506-510, 2010
972010
Phylogenetic analysis of population-based and deep sequencing data to identify coevolving sites in the nef gene of HIV-1
AFY Poon, LC Swenson, WWY Dong, W Deng, SL Kosakovsky Pond, ...
Molecular biology and evolution 27 (4), 819-832, 2010
81*2010
Performance of HIV-1 Drug Resistance Testing at Low Level Viraemia and Its Ability to Predict Future Virologic Outcomes and Viral Evolution in Treatment-Naïve Individuals
A Gonzalez-Serna, JE Min, C Woods, D Chan, V Lima, JSG Montaner, ...
Clinical Infectious Diseases 58 (8), 1165-1173, 2014
782014
Detection of inferred CCR5-and CXCR4-using HIV-1 variants and evolutionary intermediates using ultra-deep pyrosequencing
EM Bunnik, LC Swenson, D Edo-Matas, W Huang, W Dong, A Frantzell, ...
PLoS pathogens 7 (6), e1002106, 2011
762011
HIV drug resistance detected during low-level viraemia is associated with subsequent virologic failure
LC Swenson, JE Min, CK Woods, E Cai, JZ Li, JSG Montaner, ...
AIDS 28 (8), 1125-1134, 2014
692014
Comparative performances of HIV-1 RNA load assays at low viral load levels: results of an international collaboration
LC Swenson, B Cobb, AM Geretti, PR Harrigan, M Poljak, ...
Journal of clinical microbiology 52 (2), 517-523, 2014
632014
Reconstructing the dynamics of HIV evolution within hosts from serial deep sequence data
AFY Poon, LC Swenson, EM Bunnik, D Edo-Matas, H Schuitemaker, ...
PLOS Computational Biology 8 (11), e1002753, 2012
542012
Use of cellular HIV DNA to predict virologic response to maraviroc: performance of population-based and deep sequencing
LC Swenson, WWY Dong, T Mo, J Demarest, D Chapman, S Ellery, ...
Clinical infectious diseases 56 (11), 1659-1666, 2013
432013
Next-generation sequencing to assess HIV tropism
LC Swenson, M Däumer, R Paredes
Current opinion in HIV and AIDS 7 (5), 478-485, 2012
402012
HIV coreceptor phenotyping in the clinical setting.
AJ Low, LC Swenson, PR Harrigan
AIDS reviews 10 (3), 143-151, 2008
402008
Theoretical and experimental assessment of degenerate primer tagging in ultra-deep applications of next-generation sequencing
RH Liang, T Mo, W Dong, GQ Lee, LC Swenson, RM McCloskey, ...
Nucleic acids research 42 (12), e98-e98, 2014
292014
Genotypic inference of HIV-1 tropism using population-based sequencing of V3
RA McGovern, PR Harrigan, LC Swenson
JoVE (Journal of Visualized Experiments), e2531, 2010
272010
Genotypic analysis of the V3 region of HIV from virologic nonresponders to maraviroc-containing regimens reveals distinct patterns of failure
LC Swenson, CKS Chui, CJ Brumme, D Chan, CK Woods, T Mo, W Dong, ...
Antimicrobial agents and chemotherapy 57 (12), 6122-6130, 2013
26*2013
Prolonged and substantial discordance in prevalence of raltegravir-resistant HIV-1 in plasma versus PBMC samples revealed by 454 “deep” sequencing
GQ Lee, LC Swenson, AFY Poon, JN Martin, H Hatano, SG Deeks, ...
PloS one 7 (9), e46181, 2012
242012
Maraviroc, as a Switch Option, in HIV-1–infected Individuals With Stable, Well-controlled HIV Replication and R5-tropic Virus on Their First Nucleoside/Nucleotide Reverse …
SL Pett, J Amin, A Horban, J Andrade-Villanueva, M Losso, N Porteiro, ...
Clinical Infectious Diseases 63 (1), 122-132, 2016
232016
Quantification of HIV tropism by “deep” sequencing shows a broad distribution of prevalence of X4 variants in clinical samples that is associated with virological outcome
L Swenson, W Dong, T Mo, C Woods, A Thielen, M Jensen, C Glascock, ...
16th Conference on retroviruses and opportunistic infections, 8-11, 2009
232009
A single untimed plasma drug concentration measurement during low-level HIV viremia predicts virologic failure
A Gonzalez-Serna, LC Swenson, B Watson, W Zhang, A Nohpal, ...
Clinical Microbiology and Infection 22 (12), 1004. e9-1004. e16, 2016
172016
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