Vipin T. Sreedharan
Vipin T. Sreedharan
PhD student at Memorial Sloan Kettering Cancer Center/ University of Tübingen
Verified email at cbio.mskcc.org
TitleCited byYear
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
X Gan, O Stegle, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, ...
Nature 477 (7365), 419, 2011
5522011
A spatial and temporal map of C. elegans gene expression
WC Spencer, G Zeller, JD Watson, SR Henz, KL Watkins, RD McWhirter, ...
Genome research 21 (2), 325-341, 2011
2102011
RNA‐Seq read alignments with PALMapper
G Jean, A Kahles, VT Sreedharan, FD Bona, G Rätsch
Current protocols in bioinformatics 32 (1), 11.6. 1-11.6. 37, 2010
752010
RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints
Y Zhong, T Karaletsos, P Drewe, VT Sreedharan, D Kuo, K Singh, ...
Bioinformatics 33 (1), 139-141, 2016
592016
MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples
J Behr, A Kahles, Y Zhong, VT Sreedharan, P Drewe, G Rätsch
Bioinformatics 29 (20), 2529-2538, 2013
522013
Cohesin rings devoid of Scc3 and Pds5 maintain their stable association with the DNA
I Kulemzina, MR Schumacher, V Verma, J Reiter, J Metzler, AV Failla, ...
PLoS genetics 8 (8), e1002856, 2012
372012
Prediction of potent shRNAs with a sequential classification algorithm
R Pelossof, L Fairchild, CH Huang, C Widmer, VT Sreedharan, N Sinha, ...
Nature biotechnology 35 (4), 350, 2017
252017
AspAlt: A tool for inter-database, inter-genomic and user-specific comparative analysis of alternative transcription and alternative splicing in 46 eukaryotes
A Bhasi, P Philip, VT Sreedharan, P Senapathy
Genomics 94 (1), 48-54, 2009
132009
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis
VT Sreedharan, SJ Schultheiss, G Jean, A Kahles, R Bohnert, P Drewe, ...
Bioinformatics 30 (9), 1300-1301, 2014
122014
Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data
SJ Schultheiss, G Jean, J Behr, R Bohnert, P Drewe, N Görnitz, A Kahles, ...
BMC bioinformatics 12 (11), A7, 2011
62011
Neural coding: rate and time codes work together
AK Seth
Current Biology 25 (3), R110-R113, 2015
42015
RiboDiff: detecting changes of translation efficiency from ribosome footprints
Y Zhong, T Karaletsos, P Drewe, VTT Sreedharan, D Kuo, K Singh, ...
BioRxiv, 017111, 2016
32016
Current protocols in bioinformatics/editoral board, Andreas D
G Jean, A Kahles, VT Sreedharan, F De Bona, G Rätsch
Baxevanis, 2010
32010
Framework for Multi-task Multiple Kernel Learning and Applications in Genome Analysis
C Widmer, M Kloft, VT Sreedharan, G Rätsch
arXiv preprint arXiv:1506.09153, 2015
22015
Oqtans: a Galaxy-integrated Workflow for Quantitative Transcriptome Analysis from NGS Data: From Seventh International Society for Computational Biology (ISCB) Student Council …
SJ Schultheiss
Technische Universität Berlin, 2015
2015
Oqtans: a multifunctional workbench for RNA-seq data analysis
VT Sreedharan, SJ Schultheiss, G Jean, A Kahles, R Bohnert, P Drewe, ...
BMC bioinformatics 15 (S3), A7, 2014
2014
The Role of Cohesin Associated Factors, Pds5, Scc3, and Wpl1 during Cohesion Establishment and Maintenance in Budding Yeast
I Kulemzina, O Zhukova, V Sreedharan, S Heinrich, A Fadeev
2012
characteristic hinge angles. J. Cell Biol. 156, 419–424. 11. Skibbens, RV (2011). Sticking a fork in cohesin–it’s not done yet! Trends Genet. 27, 499–506.
J Reiter, J Metzler, AV Failla, C Lanz, VT Sreedharan, G Rätsch, D Ivanov
Trans. R. Soc. Lond. B Biol. Sci 360, 537-542, 2007
2007
Reproducible Quantitative Transcriptome Analysis with
VT Sreedharan, SJ Schultheiss, G Jean, A Kahles, P Drewe, R Bohnert, ...
Supplementary Methods Multiple Genomes and Transcriptomes of Arabidopsis thaliana
X Gan, O Stegle, J Behr, J Steffen, P Drewe, KL Hildebrand, R Lyngsoe, ...
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Articles 1–20