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Natalie M Clark
Natalie M Clark
Computational Scientist II, Broad Institute
Verified email at broadinstitute.org
Title
Cited by
Cited by
Year
Nucleo-cytoplasmic partitioning of ARF proteins controls auxin responses in Arabidopsis thaliana
SK Powers, AS Holehouse, DA Korasick, KH Schreiber, NM Clark, H Jing, ...
Molecular cell 76 (1), 177-190. e5, 2019
1952019
Integrated multi-omics framework of the plant response to jasmonic acid
M Zander, MG Lewsey, NM Clark, L Yin, A Bartlett, JP Saldierna Guzmán, ...
Nature plants 6 (3), 290-302, 2020
1602020
Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells
MA de Luis Balaguer, AP Fisher, NM Clark, MG Fernandez-Espinosa, ...
Proceedings of the National Academy of Sciences 114 (36), E7632-E7640, 2017
1012017
Tracking transcription factor mobility and interaction in Arabidopsis roots with fluorescence correlation spectroscopy
NM Clark, E Hinde, CM Winter, AP Fisher, G Crosti, I Blilou, E Gratton, ...
Elife 5, e14770, 2016
932016
GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis
M Shibata, C Breuer, A Kawamura, NM Clark, B Rymen, L Braidwood, ...
Development 145 (3), dev159707, 2018
682018
Exposure to heavy metal stress triggers changes in plasmodesmatal permeability via deposition and breakdown of callose
R O’Lexy, K Kasai, N Clark, T Fujiwara, R Sozzani, KL Gallagher
Journal of Experimental Botany 69 (15), 3715-3728, 2018
652018
Computational prediction of gene regulatory networks in plant growth and development
S Haque, JS Ahmad, NM Clark, CM Williams, R Sozzani
Current opinion in plant biology 47, 96-105, 2019
642019
Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks
NM Clark, E Buckner, AP Fisher, EC Nelson, TT Nguyen, AR Simmons, ...
Nature communications 10 (1), 5574, 2019
502019
Integrated omics networks reveal the temporal signaling events of brassinosteroid response in Arabidopsis
NM Clark, TM Nolan, P Wang, G Song, C Montes, CT Valentine, H Guo, ...
Nature Communications 12 (1), 5858, 2021
412021
To the proteome and beyond: advances in single-cell omics profiling for plant systems
NM Clark, JM Elmore, JW Walley
Plant Physiology 188 (2), 726-737, 2022
382022
Protein complex stoichiometry and expression dynamics of transcription factors modulate stem cell division
NM Clark, AP Fisher, B Berckmans, L Van den Broeck, EC Nelson, ...
Proceedings of the National Academy of Sciences 117 (26), 15332-15342, 2020
362020
BAM1/2 receptor kinase signaling drives CLE peptide-mediated formative cell divisions in Arabidopsis roots
AD Crook, AC Willoughby, O Hazak, S Okuda, KR VanDerMolen, ...
Proceedings of the National Academy of Sciences 117 (51), 32750-32756, 2020
322020
Novel imaging modalities shedding light on plant biology: start small and grow big
NM Clark, L Van den Broeck, M Guichard, A Stager, HG Tanner, I Blilou, ...
Annual Review of Plant Biology 71, 789-816, 2020
272020
The F-box E3 ubiquitin ligase BAF1 mediates the degradation of the brassinosteroid-activated transcription factor BES1 through selective autophagy in Arabidopsis
P Wang, TM Nolan, NM Clark, H Jiang, C Montes-Serey, H Guo, ...
The Plant Cell 33 (11), 3532-3554, 2021
262021
Integrated omics reveal novel functions and underlying mechanisms of the receptor kinase FERONIA in Arabidopsis thaliana
P Wang, NM Clark, TM Nolan, G Song, PM Bartz, CY Liao, ...
The Plant Cell 34 (7), 2594-2614, 2022
232022
Experimental data and computational modeling link auxin gradient and development in the Arabidopsis root
NM Clark, MA de Luis Balaguer, R Sozzani
Frontiers in Plant Science 5, 99166, 2014
212014
tuxnet: a simple interface to process RNA sequencing data and infer gene regulatory networks
RJ Spurney, L Van den Broeck, NM Clark, AP Fisher, ...
The Plant Journal 101 (3), 716-730, 2020
202020
Integration of multi‐omics data reveals interplay between brassinosteroid and Target of Rapamycin Complex signaling in Arabidopsis
C Montes, P Wang, CY Liao, TM Nolan, G Song, NM Clark, JM Elmore, ...
New Phytologist 236 (3), 893-910, 2022
172022
Measuring Protein Movement, Oligomerization State, and Protein–Protein Interaction in Arabidopsis Roots Using Scanning Fluorescence Correlation Spectroscopy …
NM Clark, R Sozzani
Plant genomics: Methods and protocols, 251-266, 2017
172017
Identifying Differentially expressed genes using fluorescence-activated cell sorting (FACS) and RNA sequencing from low input samples
NM Clark, AP Fisher, R Sozzani
Computational Cell Biology: Methods and Protocols, 139-151, 2018
132018
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