| Target RNA–directed trimming and tailing of small silencing RNAs SL Ameres, MD Horwich, JH Hung, J Xu, M Ghildiyal, Z Weng, PD Zamore Science 328 (5985), 1534-1539, 2010 | 695 | 2010 |
| Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells O Yildirim, R Li, JH Hung, PB Chen, X Dong, LS Ee, Z Weng, OJ Rando, ... Cell 147 (7), 1498-1510, 2011 | 523 | 2011 |
| Factorbook. org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium J Wang, J Zhuang, S Iyer, XY Lin, MC Greven, BH Kim, J Moore, ... Nucleic acids research 41 (D1), D171-D176, 2012 | 431 | 2012 |
| Gene set enrichment analysis: performance evaluation and usage guidelines JH Hung, TH Yang, Z Hu, Z Weng, C DeLisi Briefings in bioinformatics 13 (3), 281-291, 2012 | 280 | 2012 |
| Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence E Berezikov, N Robine, A Samsonova, JO Westholm, A Naqvi, JH Hung, ... Genome research 21 (2), 203-215, 2011 | 271 | 2011 |
| Dicer partner proteins tune the length of mature miRNAs in flies and mammals R Fukunaga, BW Han, JH Hung, J Xu, Z Weng, PD Zamore Cell 151 (3), 533-546, 2012 | 262 | 2012 |
| dbPTM: an information repository of protein post-translational modification TY Lee, HD Huang, JH Hung, HY Huang, YS Yang, TH Wang Nucleic acids research 34 (suppl_1), D622-D627, 2006 | 262 | 2006 |
| VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology Z Hu, JH Hung, Y Wang, YC Chang, CL Huang, M Huyck, C DeLisi Nucleic acids research 37 (suppl_2), W115-W121, 2009 | 246 | 2009 |
| High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm BR Carone, JH Hung, SJ Hainer, MT Chou, DM Carone, Z Weng, ... Developmental cell 30 (1), 11-22, 2014 | 233 | 2014 |
| Long-term, efficient inhibition of microRNA function in mice using rAAV vectors J Xie, SL Ameres, R Friedline, JH Hung, Y Zhang, Q Xie, L Zhong, Q Su, ... Nature methods 9 (4), 403-409, 2012 | 230 | 2012 |
| The 3′-to-5′ exoribonuclease Nibbler shapes the 3′ ends of microRNAs bound to Drosophila Argonaute1 BW Han, JH Hung, Z Weng, PD Zamore, SL Ameres Current biology 21 (22), 1878-1887, 2011 | 203 | 2011 |
| MicroRNA-regulated, systemically delivered rAAV9: a step closer to CNS-restricted transgene expression J Xie, Q Xie, H Zhang, SL Ameres, JH Hung, Q Su, R He, X Mu, ... Molecular therapy 19 (3), 526-535, 2011 | 197 | 2011 |
| Sequence alignment and homology search with BLAST and ClustalW JH Hung, Z Weng Cold Spring Harbor Protocols 2016 (11), pdb. prot093088, 2016 | 94 | 2016 |
| Identification of functional modules that correlate with phenotypic difference: the influence of network topology JH Hung, TW Whitfield, TH Yang, Z Hu, Z Weng, C DeLisi Genome biology 11, 1-16, 2010 | 90 | 2010 |
| Performance of ZDOCK and ZRANK in CAPRI rounds 13–19 H Hwang, T Vreven, BG Pierce, JH Hung, Z Weng Proteins: Structure, Function, and Bioinformatics 78 (15), 3104-3110, 2010 | 87 | 2010 |
| Hdac6 regulates Tip60-p400 function in stem cells PB Chen, JH Hung, TL Hickman, AH Coles, JF Carey, Z Weng, F Chu, ... Elife 2, e01557, 2013 | 78 | 2013 |
| Uridylation of RNA hairpins by tailor confines the emergence of microRNAs in Drosophila MM Reimão-Pinto, V Ignatova, TR Burkard, JH Hung, RA Manzenreither, ... Molecular cell 59 (2), 203-216, 2015 | 72 | 2015 |
| Using functional signatures to identify repositioned drugs for breast, myelogenous leukemia and prostate cancer D Shigemizu, Z Hu, JH Hung, CL Huang, Y Wang, C DeLisi PLoS computational biology 8 (2), e1002347, 2012 | 72 | 2012 |
| Target RNA-directed tailing and trimming purifies the sorting of endo-siRNAs between the two Drosophila Argonaute proteins SL Ameres, JH Hung, J Xu, Z Weng, PD Zamore Rna 17 (1), 54-63, 2011 | 68 | 2011 |
| A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing CH Chou, FM Lin, MT Chou, SD Hsu, TH Chang, SL Weng, S Shrestha, ... BMC genomics 14, 1-11, 2013 | 61 | 2013 |
