Shuyi Ma
Shuyi Ma
Assistant Professor at Seattle Children's Research Institute
Verified email at uw.edu - Homepage
Title
Cited by
Cited by
Year
Incipient and subclinical tuberculosis: a clinical review of early stages and progression of infection
PK Drain, KL Bajema, D Dowdy, K Dheda, K Naidoo, SG Schumacher, ...
Clinical microbiology reviews 31 (4), 2018
1552018
The DNA-binding network of Mycobacterium tuberculosis
KJ Minch, TR Rustad, EJR Peterson, J Winkler, DJ Reiss, S Ma, M Hickey, ...
Nature communications 6, 5829, 2015
1502015
Antigen Availability Shapes T Cell Differentiation and Function during Tuberculosis
AO Moguche, M Musvosvi, A Penn-Nicholson, CR Plumlee, H Mearns, ...
Cell Host & Microbe 21 (6), 695-706. e5, 2017
1022017
Mapping and manipulating the Mycobacterium tuberculosis transcriptome using a transcription factor overexpression-derived regulatory network
TR Rustad, KJ Minch, S Ma, JK Winkler, S Hobbes, MJ Hickey, W Brabant, ...
Genome Biology 15 (11), 502, 2014
1002014
Methodology for using long-term accelerometry monitoring to describe daily activity patterns in COPD
A Hecht, S Ma, J Porszasz, R Casaburi, COPD Clinical Research Network
COPD: Journal of Chronic Obstructive Pulmonary Disease 6 (2), 121-129, 2009
952009
Bacterial factors that predict relapse after tuberculosis therapy
R Colangeli, H Jedrey, S Kim, R Connell, S Ma, UD Chippada Venkata, ...
New England Journal of Medicine 379 (9), 823-833, 2018
702018
Integrated Modeling of Gene Regulatory and Metabolic Networks in Mycobacterium tuberculosis
S Ma, KJ Minch, TR Rustad, S Hobbs, SL Zhou, DR Sherman, ND Price
PLoS Computational Biology 11 (11), 2015
482015
Network analysis identifies Rv0324 and Rv0880 as regulators of bedaquiline tolerance in Mycobacterium tuberculosis
EJR Peterson, S Ma, DR Sherman, NS Baliga
Nature Microbiology, 2016
462016
A comprehensive map of genome-wide gene regulation in Mycobacterium tuberculosis
S Turkarslan, EJR Peterson, TR Rustad, KJ Minch, DJ Reiss, R Morrison, ...
Scientific Data 2, 2015
422015
Clarifying the equation for modeling of V̇o2 kinetics above the lactate threshold
S Ma, HB Rossiter, TJ Barstow, R Casaburi, J Porszasz
Journal of Applied Physiology 109 (4), 1283-1284, 2010
302010
Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast
Z Wang, SA Danziger, BD Heavner, S Ma, JJ Smith, S Li, T Herricks, ...
PLOS Computational Biology 13 (5), e1005489, 2017
242017
Phase variation in Mycobacterium tuberculosis glpK produces transiently heritable drug tolerance
H Safi, P Gopal, S Lingaraju, S Ma, C Levine, V Dartois, M Yee, L Li, ...
Proceedings of the National Academy of Sciences 116 (39), 19665-19674, 2019
232019
Label-free proteomics and systems biology analysis of mycobacterial phagosomes in dendritic cells and macrophages
Q Li, CR Singh, S Ma, ND Price, C Jagannath
Journal of proteome research 10 (5), 2425-2439, 2011
232011
Sinusoidal high‐intensity exercise does not elicit ventilatory limitation in chronic obstructive pulmonary disease
J Porszasz, M Rambod, H van der Vaart, HB Rossiter, S Ma, R Kiledjian, ...
Experimental physiology 98 (6), 1102-1114, 2013
212013
Multi-study Integration of Brain Cancer Transcriptomes Reveals Organ-Level Molecular Signatures
J Sung, PJK Kim, S Ma, CC Funk, AT Magis, Y Wang, L Hood, D Geman, ...
PLoS Computational Biology 9 (7), 2013
202013
Relation of Concavity in the Expiratory Flow-Volume Loop to Dynamic Hyperinflation during Exercise in COPD
J Varga, R Casaburi, S Ma, A Hecht, A Somfay, Porszasz
Respiratory Physiology & Neurobiology 234, 79-84, 2016
182016
Breath-by-breath quantification of progressive airflow limitation during exercise in COPD: A new method
S Ma, A Hecht, J Varga, M Rambod, S Morford, S Goto, R Casaburi, ...
Respiratory medicine 104 (3), 389-396, 2010
182010
Spatial modeling of prostate cancer metabolic gene expression reveals extensive heterogeneity and selective vulnerabilities
Y Wang, S Ma, R Walter L
Scientific Reports 10 (1), 1-14, 2020
172020
Measuring the Effect of Inter-Study Variability on Estimating Prediction Error
S Ma, J Sung, AT Magis, Y Wang, D Geman, ND Price
PLoS ONE 9 (10), 2014
172014
The DNA-binding network of Mycobacterium tuberculosis. Nat Commun 6: 5829
KJ Minch, TR Rustad, EJ Peterson, J Winkler, DJ Reiss, S Ma, M Hickey, ...
142015
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