Stefano Berri
Stefano Berri
Bioinformatics scientist, Illumina
Verified email at - Homepage
Cited by
Cited by
Correcting for cancer genome size and tumour cell content enables better estimation of copy number alterations from next generation sequence data
A Gusnanto, HM Wood, Y Pawitan, P Rabbitts, S Berri
Bioinformatics, 2011
Characterization of WRKYco-regulatory networks in rice and Arabidopsis
S Berri, P Abbruscato, O Faivre-Rampant, ACM Brasileiro, I Fumasoni, ...
BMC plant biology 9, 1-22, 2009
Forward locomotion of the nematode C. elegans is achieved through modulation of a single gait
S Berri, JH Boyle, M Tassieri, IA Hope, N Cohen
HFSP journal 3 (3), 186-193, 2009
Gait Modulation in C. elegans: An Integrated Neuromechanical Model
JH Boyle, S Berri, N Cohen
Frontiers in computational neuroscience 6, 10, 2012
EU-OSTID: a collection of transposon insertional mutants for functional genomics in rice
LJG Van Enckevort, G Droc, P Piffanelli, R Greco, C Gagneur, C Weber, ...
Plant Molecular Biology 59, 99-110, 2005
Diagnosis of copy number variation by Illumina next generation sequencing is comparable in performance to oligonucleotide array comparative genomic hybridisation
JL Hayes, A Tzika, H Thygesen, S Berri, HM Wood, S Hewitt, ...
Genomics 102 (3), 174-181, 2013
Next-generation sequencing for simultaneous determination of human papillomavirus load, subtype, and associated genomic copy number changes in tumors
C Conway, R Chalkley, A High, K Maclennan, S Berri, P Chengot, ...
The Journal of Molecular Diagnostics 14 (2), 104-111, 2012
The clonal relationships between pre‐cancer and cancer revealed by ultra‐deep sequencing
HM Wood, C Conway, C Daly, R Chalkley, S Berri, B Senguven, L Stead, ...
The Journal of pathology 237 (3), 296-306, 2015
Estimating optimal window size for analysis of low-coverage next-generation sequence data
A Gusnanto, CC Taylor, I Nafisah, HM Wood, P Rabbitts, S Berri
Bioinformatics 30 (13), 1823-1829, 2014
Next-generation sequencing analysis for detecting human papillomavirus in oral verrucous carcinoma
M Samman, H Wood, C Conway, S Berri, M Pentenero, S Gandolfo, ...
Oral surgery, oral medicine, oral pathology and oral radiology 118 (1), 117 …, 2014
Gait Modulation in C. Elegans: It's Not a Choice, It's a Reflex!
JH Boyle, S Berri, M Tassieri, IA Hope, N Cohen
Frontiers in behavioral neuroscience 5, 10, 2011
Diagnosis of fetal submicroscopic chromosomal abnormalities in failed array CGH samples: copy number by sequencing as an alternative to microarrays for invasive fetal testing
K Cohen, A Tzika, H Wood, S Berri, P Roberts, G Mason, E Sheridan
Ultrasound in Obstetrics & Gynecology 45 (4), 394-401, 2015
A computational index derived from whole-genome copy number analysis is a novel tool for prognosis in early stage lung squamous cell carcinoma
O Belvedere, S Berri, R Chalkley, C Conway, F Barbone, F Pisa, ...
Genomics, 2011
A novel genomic signature reclassifies an oral cancer subtype
M Samman, HM Wood, C Conway, L Stead, C Daly, R Chalkley, S Berri, ...
International journal of cancer 137 (10), 2364-2373, 2015
The transcriptional consequences of somatic amplifications, deletions, and rearrangements in a human lung squamous cell carcinoma
LF Stead, S Berri, HM Wood, P Egan, C Conway, C Daly, ...
Neoplasia 14 (11), 1075-IN16, 2012
tHapMix: simulating tumour samples through haplotype mixtures
S Ivakhno, C Colombo, S Tanner, P Tedder, S Berri, AJ Cox
Bioinformatics 33 (2), 280-282, 2017
An integrated inspection of the somatic mutations in a lung squamous cell carcinoma using next-generation sequencing
LF Stead, P Egan, A Devery, C Conway, C Daly, S Berri, H Wood, ...
PLoS One 8 (11), e78823, 2013
C. elegans locomotion: a unified multidisciplinary perspective
S Berri, JH Boyle, M Tassieri, IA Hope, N Cohen
BMC Neuroscience 10 (1), 1-1, 2009
OC-033 Nine-gene signature implicated in the early development of hepatitis c virus (HCV) related hepatocellular carcinoma (HCC)
W Fateen, H Wood, S Berri, H Thygesen, J Wyatt, M El-Meteini, C Millson, ...
Gut 65 (Suppl 1), A20-A20, 2016
PWE-044 Inter-Tumour Heterogeneity in Hepatitis C Virus (HCV) Related Multi-Focal Hepatocellular Carcinoma (HCC)
W Fateen, H Wood, S Berri, J Wyatt, M El-Meteini, C Millson, P Quirke
Gut 65 (Suppl 1), A160-A160, 2016
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