Joshua Quick
Joshua Quick
Bioinformatician, University of Birmingham
Verified email at bham.ac.uk
TitleCited byYear
Real-time, portable genome sequencing for Ebola surveillance
J Quick, NJ Loman, S Duraffour, JT Simpson, E Severi, L Cowley, JA Bore, ...
Nature 530 (7589), 228, 2016
5492016
A complete bacterial genome assembled de novo using only nanopore sequencing data
NJ Loman, J Quick, JT Simpson
Nature methods 12 (8), 733, 2015
4332015
Binning metagenomic contigs by coverage and composition
J Alneberg, BS Bjarnason, I De Bruijn, M Schirmer, J Quick, UZ Ijaz, ...
Nature methods 11 (11), 1144, 2014
4272014
Nanopore sequencing and assembly of a human genome with ultra-long reads
M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ...
Nature biotechnology 36 (4), 338, 2018
4162018
A culture-independent sequence-based metagenomics approach to the investigation of an outbreak of Shiga-toxigenic Escherichia coli O104: H4
NJ Loman, C Constantinidou, M Christner, H Rohde, JZM Chan, J Quick, ...
Jama 309 (14), 1502-1510, 2013
2202013
Establishment and cryptic transmission of Zika virus in Brazil and the Americas
NR Faria, J Quick, IM Claro, J Theze, JG de Jesus, M Giovanetti, ...
Nature 546 (7658), 406, 2017
2172017
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
J Quick, P Ashton, S Calus, C Chatt, S Gossain, J Hawker, S Nair, K Neal, ...
Genome Biology 16 (1), 114, 2015
1772015
A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer
J Quick, AR Quinlan, NJ Loman
Gigascience 3 (1), 22, 2014
1702014
Genomic epidemiology reveals multiple introductions of Zika virus into the United States
ND Grubaugh, JT Ladner, MUG Kraemer, G Dudas, AL Tan, ...
Nature 546 (7658), 401, 2017
1402017
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ...
nature protocols 12 (6), 1261, 2017
1382017
Virus genomes reveal factors that spread and sustained the Ebola epidemic
G Dudas, LM Carvalho, T Bedford, AJ Tatem, G Baele, NR Faria, DJ Park, ...
Nature 544 (7650), 309, 2017
1312017
Extensive modulation of the fecal metagenome in children with Crohn’s disease during exclusive enteral nutrition
C Quince, UZ Ijaz, N Loman, AM Eren, D Saulnier, J Russell, SJ Haig, ...
The American journal of gastroenterology 110 (12), 1718, 2015
982015
Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe
GL Kay, MJ Sergeant, Z Zhou, JZM Chan, A Millard, J Quick, I Szikossy, ...
Nature communications 6, 6717, 2015
842015
Seeking the source of Pseudomonas aeruginosa infections in a recently opened hospital: an observational study using whole-genome sequencing
J Quick, N Cumley, CM Wearn, M Niebel, C Constantinidou, CM Thomas, ...
BMJ open 4 (11), e006278, 2014
722014
Genomic and epidemiological monitoring of yellow fever virus transmission potential
NR Faria, MUG Kraemer, SC Hill, JG De Jesus, RS Aguiar, FCM Iani, ...
Science 361 (6405), 894-899, 2018
472018
De novo identification of DNA modifications enabled by genome-guided nanopore signal processing
MH Stoiber, J Quick, R Egan, JE Lee, SE Celniker, R Neely, N Loman, ...
BioRxiv, 094672, 2016
232016
A few good climate shifters
RA Kerr
Science 306 (5696), 599-601, 2004
212004
CONCOCT: clustering contigs on coverage and composition
J Alneberg, BS Bjarnason, I de Bruijn, M Schirmer, J Quick, UZ Ijaz, ...
arXiv preprint arXiv:1312.4038, 2013
182013
Nanopore sequencing and assembly of a human genome with ultra-long reads. bioRxiv
M Jain, S Koren, J Quick, AC Rand, TA Sasani, JR Tyson, AD Beggs, ...
DOI: https://doi. org/10.1101/128835, 2017
162017
Deletions in a ribosomal protein-coding gene are associated with tigecycline resistance in Enterococcus faecium
M Niebel, J Quick, AMG Prieto, RLR Hill, R Pike, D Huber, M David, ...
International journal of antimicrobial agents 46 (5), 572-575, 2015
162015
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