Ji Qi
Ji Qi
Professor of Computational Biology, Fudan University
Verified email at fudan.edu.cn
Title
Cited by
Cited by
Year
MEGAN analysis of metagenomic data
DH Huson, AF Auch, J Qi, SC Schuster
Genome research 17 (3), 377-386, 2007
24332007
Archaea predominate among ammonia-oxidizing prokaryotes in soils
S Leininger, T Urich, M Schloter, L Schwark, J Qi, GW Nicol, JI Prosser, ...
Nature 442 (7104), 806-809, 2006
22902006
Nucleosome organization in the Drosophila genome
TN Mavrich, C Jiang, IP Ioshikhes, X Li, BJ Venters, SJ Zanton, ...
Nature 453 (7193), 358-362, 2008
7372008
Translational and rotational settings of H2A. Z nucleosomes across the Saccharomyces cerevisiae genome
I Albert, TN Mavrich, LP Tomsho, J Qi, SJ Zanton, SC Schuster, BF Pugh
Nature 446 (7135), 572-576, 2007
6952007
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
TN Mavrich, IP Ioshikhes, BJ Venters, C Jiang, LP Tomsho, J Qi, ...
Genome research 18 (7), 1073-1083, 2008
6812008
Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome
T Urich, A Lanzén, J Qi, DH Huson, C Schleper, SC Schuster
PLoS One 3 (6), e2527, 2008
6742008
Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA
HN Poinar, C Schwarz, J Qi, B Shapiro, RDE MacPhee, B Buigues, ...
science 311 (5759), 392-394, 2006
6562006
Complete Khoisan and Bantu genomes from southern Africa
SC Schuster, W Miller, A Ratan, LP Tomsho, B Giardine, LR Kasson, ...
Nature 463 (7283), 943-947, 2010
4502010
Whole proteome prokaryote phylogeny without sequence alignment: a K-string composition approach
J Qi, B Wang, BI Hao
Journal of molecular evolution 58 (1), 1-11, 2004
4162004
Sequencing the nuclear genome of the extinct woolly mammoth
W Miller, DI Drautz, A Ratan, B Pusey, J Qi, AM Lesk, LP Tomsho, ...
Nature 456 (7220), 387-390, 2008
3402008
CVTree: a phylogenetic tree reconstruction tool based on whole genomes
J Qi, H Luo, B Hao
Nucleic acids research 32 (suppl 2), W45-W47, 2004
2362004
Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil)(vol 108, pg 12348, 2011)
W Miller, VM Hayes, A Ratan, DC Petersen, NE Wittekindt, J Miller, ...
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF …, 2012
200*2012
Metagenomic sequencing reveals microbiota and its functional potential associated with periodontal disease
J Wang, J Qi, H Zhao, S He, Y Zhang, S Wei, F Zhao
Scientific Reports 3, 2013
1962013
Metagenomic profile of the bacterial communities associated with Ixodes ricinus ticks
G Carpi, F Cagnacci, NE Wittekindt, F Zhao, J Qi, LP Tomsho, DI Drautz, ...
PloS one 6 (10), e25604, 2011
1872011
Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear
C Lindqvist, SC Schuster, Y Sun, SL Talbot, J Qi, A Ratan, LP Tomsho, ...
Proceedings of the National Academy of Sciences 107 (11), 5053-5057, 2010
1622010
Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes
MTP Gilbert, DI Drautz, AM Lesk, SYW Ho, J Qi, A Ratan, CH Hsu, A Sher, ...
Proceedings of the National Academy of Sciences 105 (24), 8327-8332, 2008
1592008
Rapid diversification of coevolving marine Synechococcus and a virus
MF Marston, FJ Pierciey, A Shepard, G Gearin, J Qi, C Yandava, ...
Proceedings of the National Academy of Sciences 109 (12), 4544-4549, 2012
1572012
Saccharina genomes provide novel insight into kelp biology
N Ye, X Zhang, M Miao, X Fan, Y Zheng, D Xu, J Wang, L Zhou, D Wang, ...
Nature communications 6, 2015
1322015
The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)
W Miller, DI Drautz, JE Janecka, AM Lesk, A Ratan, LP Tomsho, ...
Genome Research 19 (2), 213-220, 2009
1262009
Origin and phylogeny of chloroplasts revealed by a simple correlation analysis of complete genomes
KH Chu, J Qi, ZG Yu, VO Anh
Molecular biology and evolution 21 (1), 200-206, 2004
1212004
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Articles 1–20