Eric E. Allen
Eric E. Allen
Professor of Marine Biology, University of California San Diego
Verified email at ucsd.edu
Title
Cited by
Cited by
Year
Community structure and metabolism through reconstruction of microbial genomes from the environment
GW Tyson, J Chapman, P Hugenholtz, EE Allen, RJ Ram, PM Richardson, ...
Nature 428 (6978), 37-43, 2004
23462004
The genome of a motile marine Synechococcus
B Palenik, B Brahamsha, FW Larimer, M Land, L Hauser, P Chain, ...
Nature 424 (6952), 1037-1042, 2003
6812003
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing
PJ Keeling, F Burki, HM Wilcox, B Allam, EE Allen, LA Amaral-Zettler, ...
PLoS Biol 12 (6), e1001889, 2014
5872014
The yeast genome directory
AEA Goffeau, R Aert, ML Agostini-Carbone, A Ahmed, M Aigle, ...
Nature 387 (6632), 5-6, 1997
4771997
Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species
PA Morin, FI Archer, AD Foote, J Vilstrup, EE Allen, P Wade, J Durban, ...
Genome research 20 (7), 908-916, 2010
3812010
Community cyberinfrastructure for advanced microbial ecology research and analysis: the CAMERA resource
S Sun, J Chen, W Li, I Altintas, A Lin, S Peltier, K Stocks, EE Allen, ...
Nucleic acids research 39 (suppl_1), D546-D551, 2010
3562010
The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity
N Ziemert, S Podell, K Penn, JH Badger, E Allen, PR Jensen
PloS one 7 (3), e34064, 2012
2882012
De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities
P Narasingarao, S Podell, JA Ugalde, C Brochier-Armanet, JB Emerson, ...
The ISME journal 6 (1), 81-93, 2012
2722012
Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community
GW Tyson, I Lo, BJ Baker, EE Allen, P Hugenholtz, JF Banfield
Applied and environmental microbiology 71 (10), 6319-6324, 2005
2542005
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria
I Lo, VJ Denef, NC VerBerkmoes, MB Shah, D Goltsman, G DiBartolo, ...
Nature 446 (7135), 537-541, 2007
2442007
Community genomics in microbial ecology and evolution
EE Allen, JF Banfield
Nature reviews microbiology 3 (6), 489-498, 2005
2412005
Monounsaturated but not polyunsaturated fatty acids are required for growth of the deep-sea bacteriumPhotobacterium profundum SS9 at high pressure and low temperature
EE Allen, D Facciotti, DH Bartlett
Applied and Environmental Microbiology 65 (4), 1710-1720, 1999
2301999
Structure and regulation of the omega-3 polyunsaturated fatty acid synthase genes from the deep-sea bacterium Photobacterium profundum strain SS9The GenBank accession numbers …
EE Allen, DH Bartlett
Microbiology 148 (6), 1903-1913, 2002
2002002
Lineages of acidophilic archaea revealed by community genomic analysis
BJ Baker, GW Tyson, RI Webb, J Flanagan, P Hugenholtz, EE Allen, ...
Science 314 (5807), 1933-1935, 2006
1932006
Biosynthesis of polybrominated aromatic organic compounds by marine bacteria
V Agarwal, AA El Gamal, K Yamanaka, D Poth, RD Kersten, M Schorn, ...
Nature chemical biology 10 (8), 640-647, 2014
1742014
Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria
K Penn, C Jenkins, M Nett, DW Udwary, EA Gontang, RP McGlinchey, ...
The ISME journal 3 (10), 1193-1203, 2009
1702009
Genome dynamics in a natural archaeal population
EE Allen, GW Tyson, RJ Whitaker, JC Detter, PM Richardson, JF Banfield
Proceedings of the National Academy of Sciences 104 (6), 1883-1888, 2007
1392007
Metabolic versatility of the Riftia pachyptila endosymbiont revealed through metagenomics
JC Robidart, SR Bench, RA Feldman, A Novoradovsky, SB Podell, ...
Environmental Microbiology 10 (3), 727-737, 2008
1232008
Compositional differences in particle‐associated and free‐living microbial assemblages from an extreme deep‐ocean environment
EA Eloe, CN Shulse, DW Fadrosh, SJ Williamson, EE Allen, DH Bartlett
Environmental microbiology reports 3 (4), 449-458, 2011
1202011
Characterization of cyanobacterial hydrocarbon composition and distribution of biosynthetic pathways
RC Coates, S Podell, A Korobeynikov, A Lapidus, P Pevzner, ...
PLOS one 9 (1), e85140, 2014
1112014
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