Christophe Klopp

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Yann GuiguenResearch Scientist at INRAEVerified email at inra.fr
PitelVerified email at toulouse.inra.fr
Julien BobeINRAVerified email at rennes.inra.fr
ROCHA DominiqueINRAeVerified email at inrae.fr
John PostlethwaitProfessor of Biology, University of OregonVerified email at uoneuro.uoregon.edu
Christophe PlomionINRAE, Univ. Bordeaux, BIOGECOVerified email at inrae.fr
Mekki BoussahaSenior Research ScientistVerified email at inrae.fr
Laurent JournotInstitut de Genomique Fonctionnelle, Montpellier, FranceVerified email at igf.cnrs.fr
Antoine KremerINRA Université de Bordeaux UMR BIOGECOVerified email at pierroton.inra.fr
Alain VignalDirecteur de Recherches, INRA ToulouseVerified email at toulouse.inra.fr
jean-luc guerinProfesseur, Aviculture &Pathologie Aviaire - ENVT UMR INRA-ENVT IHAPVerified email at envt.fr
Manfred SchartlPhysiological Chemistry, University of Würzburg, Biozentrum, Am Hubland, 97070 Würzburg, Germany and Comprehensive Cancer Center, University Clinic Würzburg, Josef Schneider Straße 6, 97080 Würzburg, Germany and Texas Institute for Advanced Study and Department of Biology, Texas A&M University, College Station, USAVerified email at biozentrum.uni-wuerzburg.de
Pierre PontarottiCNRSVerified email at univ-amu.fr
Michel DuclosBOA INRA Université de ToursVerified email at inra.fr
Pierre-Francois RouxPostdoctoral Researcher, IRCM, MontpellierVerified email at pasteur.fr
Gabrielle Potocki-VeroneseINRAE Research director, TBIVerified email at insa-toulouse.fr
Salse JérômeINRA, GDEC 1095Verified email at clermont.inra.fr
Bernard WeissProfessor of Environmental Medicine, University of Rochester School of Medicine and DentistryVerified email at urmc.rochester.edu
Acloque H.INRAVerified email at inra.fr
Magali Remaud-SimeonProfesseur Insa ToulouseVerified email at insa-toulouse.fr

Christophe Klopp

Research engineer

Verified email at inrae.fr

bio-informatics genome and transcriptome assembly variation discovery


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
The tomato genome sequence provides insights into fleshy fruit evolution Tomato Genome Consortium Nature 485 (7400), 635, 2012	2365	2012
The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates C Berthelot, F Brunet, D Chalopin, A Juanchich, M Bernard, B Noël, ... Nature communications 5 (1), 1-10, 2014	676	2014
Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle HD Daetwyler, A Capitan, H Pausch, P Stothard, R Van Binsbergen, ... Nature genetics 46 (8), 858-865, 2014	619	2014
jvenn: an interactive Venn diagram viewer P Bardou, J Mariette, F Escudié, C Djemiel, C Klopp BMC bioinformatics 15 (1), 1-7, 2014	586	2014
The BioMart community portal: an innovative alternative to large, centralized data repositories D Smedley, S Haider, S Durinck, L Pandini, P Provero, J Allen, O Arnaiz, ... Nucleic acids research 43 (W1), W589-W598, 2015	555	2015
Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota M Serino, E Luche, S Gres, A Baylac, M Bergé, C Cenac, A Waget, ... Gut 61 (4), 543-553, 2012	527	2012
An immune-related gene evolved into the master sex-determining gene in rainbow trout, Oncorhynchus mykiss A Yano, R Guyomard, B Nicol, E Jouanno, E Quillet, C Klopp, C Cabau, ... Current Biology 22 (15), 1423-1428, 2012	385	2012
Involvement of tissue bacteria in the onset of diabetes in humans: evidence for a concept J Amar, M Serino, C Lange, C Chabo, J Iacovoni, S Mondot, P Lepage, ... Diabetologia 54 (12), 3055-3061, 2011	284	2011
Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes L Tasse, J Bercovici, S Pizzut-Serin, P Robe, J Tap, C Klopp, BL Cantarel, ... Genome research 20 (11), 1605-1612, 2010	221	2010
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database J Pasquier, C Cabau, T Nguyen, E Jouanno, D Severac, I Braasch, ... BMC genomics 17 (1), 1-10, 2016	187	2016
Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets Z Asma, C Sylvie, C Laurent, M Jérôme, K Christophe, B Olivier, ... FEMS microbiology ecology 83 (2), 504-514, 2013	162	2013
Detection of haplotypes associated with prenatal death in dairy cattle and identification of deleterious mutations in GART, SHBG and SLC37A2 S Fritz, A Capitan, A Djari, SC Rodriguez, A Barbat, A Baur, C Grohs, ... PloS one 8 (6), e65550, 2013	161	2013
Design and characterization of a 52K SNP chip for goats G Tosser-Klopp, P Bardou, O Bouchez, C Cabau, R Crooijmans, Y Dong, ... PloS one 9 (1), e86227, 2014	158	2014
Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase E Fleury, A Huvet, C Lelong, J De Lorgeril, V Boulo, Y Gueguen, ... BMC genomics 10 (1), 1-15, 2009	146	2009
Oak genome reveals facets of long lifespan C Plomion, JM Aury, J Amselem, T Leroy, F Murat, S Duplessis, S Faye, ... Nature Plants 4 (7), 440-452, 2018	130	2018
D-GENIES: dot plot large genomes in an interactive, efficient and simple way F Cabanettes, C Klopp PeerJ 6, e4958, 2018	124	2018
De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology J Canales, R Bautista, P Label, J Gómez‐Maldonado, I Lesur, ... Plant Biotechnology Journal 12 (3), 286-299, 2014	109	2014
Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing C Billerey, M Boussaha, D Esquerré, E Rebours, A Djari, C Meersseman, ... BMC genomics 15 (1), 1-10, 2014	106	2014
Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies C Plomion, JM Aury, J Amselem, T Alaeitabar, V Barbe, C Belser, ... Molecular ecology resources 16 (1), 254-265, 2016	95	2016
Attenuated sensing of SHH by Ptch1 underlies evolution of bovine limbs J Lopez-Rios, A Duchesne, D Speziale, G Andrey, KA Peterson, ... Nature 511 (7507), 46-51, 2014	94	2014

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