Pedro Gonnet
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A role for codon order in translation dynamics
G Cannarozzi, NN Schraudolph, M Faty, P von Rohr, MT Friberg, AC Roth, ...
Cell 141 (2), 355-367, 2010
Curvature induced L-defects in water conduction in carbon nanotubes
U Zimmerli, PG Gonnet, JH Walther, P Koumoutsakos
Nano letters 5 (6), 1017-1022, 2005
Robust Padé approximation via SVD
P Gonnet, S Guttel, LN Trefethen
SIAM review 55 (1), 101-117, 2013
A simple algorithm to accelerate the computation of non‐bonded interactions in cell‐based molecular dynamics simulations
P Gonnet
Journal of Computational Chemistry 28 (2), 570-573, 2007
Water–carbon interactions 2: calibration of potentials using contact angle data for different interaction models
RL Jaffe, P Gonnet, T Werder, JH Walther, P Koumoutsakos
Molecular Simulation 30 (4), 205-216, 2004
Robust rational interpolation and least-squares
P Gonnet, R Pachón, LN Trefethen
P-SHAKE: a quadratically convergent shake in O(n^2)
P Gonnet
Journal of Computational Physics 220 (2), 740-750, 2007
Fine‐tuning the prediction of sequences cleaved by signal peptidase II: A curated set of proven and predicted lipoproteins of Escherichia coli K‐12
P Gonnet, KE Rudd, F Lisacek
Proteomics 4 (6), 1597-1613, 2004
A Review of Error Estimation in Adaptive Quadrature
P Gonnet
ACM Computing Surveys (CSUR) 44 (4), Article No. 22, 2012
Water–carbon interactions III: the influence of surface and fluid impurities
JH Walther, T Werder, RL Jaffe, P Gonnet, M Bergdorf, U Zimmerli, ...
Physical Chemistry Chemical Physics 6 (8), 1988-1995, 2004
Increasing the reliability of adaptive quadrature using explicit interpolants
P Gonnet
ACM Transactions on Mathematical Software (TOMS) 37 (3), 1-32, 2010
Stability of barycentric interpolation formulas
M Webb, LN Trefethen, P Gonnet
SISC J. Sci. Comp, 2011
Probabilistic alignment of motifs with sequences
P Gonnet, F Lisacek
Bioinformatics 18 (8), 1091-1101, 2002
Pairwise verlet lists: Combining cell lists and verlet lists to improve memory locality and parallelism
P Gonnet
Journal of computational chemistry 33 (1), 76-81, 2012
Fast and stable rational interpolation in roots of unity and Chebyshev points
R Pachon, P Gonnet, J Van Deun
SIAM J. Numer. Anal. 50 (3), 1713-1734, 2010
A specialized ODE integrator for the efficient computation of parameter sensitivities
P Gonnet, S Dimopoulos, L Widmer, J Stelling
BMC systems biology 6 (1), 46, 2012
SWIFT: Using task-based parallelism, fully asynchronous communication, and graph partition-based domain decomposition for strong scaling on more than 100,000 cores
M Schaller, P Gonnet, ABG Chalk, PW Draper
Proceedings of the Platform for Advanced Scientific Computing Conference, 1-10, 2016
Adaptive quadrature re-revisited
P Gonnet
Lulu. com, 2009
Efficient and Scalable Algorithms for Smoothed Particle Hydrodynamics on Hybrid Shared/Distributed-Memory Architectures
P Gonnet
SIAM J. Sci. Comput. 37 (1), C95–C121, 2015
Fast multi-language LSTM-based online handwriting recognition
V Carbune, P Gonnet, T Deselaers, HA Rowley, A Daryin, M Calvo, ...
International Journal on Document Analysis and Recognition (IJDAR), 1-14, 2020
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