Tatsuya Akutsu
Tatsuya Akutsu
Professor, Bioinformatics Center, Institute for Chemical Research, Kyoto University
Verified email at kuicr.kyoto-u.ac.jp
Title
Cited by
Cited by
Year
Identification of genetic networks from a small number of gene expression patterns under the Boolean network model
T Akutsu, S Miyano, S Kuhara
Biocomputing'99, 17-28, 1999
9321999
Inferring qualitative relations in genetic networks and metabolic pathways
T Akutsu, S Miyano, S Kuhara
Bioinformatics 16 (8), 727-734, 2000
4942000
Protein homology detection using string alignment kernels
H Saigo, JP Vert, N Ueda, T Akutsu
Bioinformatics 20 (11), 1682-1689, 2004
4602004
Control of Boolean networks: Hardness results and algorithms for tree structured networks
T Akutsu, M Hayashida, WK Ching, MK Ng
Journal of theoretical biology 244 (4), 670-679, 2007
4312007
Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots
T Akutsu
Discrete Applied Mathematics 104 (1-3), 45-62, 2000
3672000
Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function
T Akutsu, S Miyano, S Kuhara
Journal of computational biology 7 (3-4), 331-343, 2000
2332000
Graph kernels for molecular structure− activity relationship analysis with support vector machines
P Mahé, N Ueda, T Akutsu, JL Perret, JP Vert
Journal of chemical information and modeling 45 (4), 939-951, 2005
2272005
Extensions of marginalized graph kernels
P Mahé, N Ueda, T Akutsu, JL Perret, JP Vert
Proceedings of the twenty-first international conference on Machine learning, 70, 2004
2122004
PROSPER: an integrated feature-based tool for predicting protease substrate cleavage sites
J Song, H Tan, AJ Perry, T Akutsu, GI Webb, JC Whisstock, RN Pike
PloS one 7 (11), e50300, 2012
1932012
Identification of gene regulatory networks by strategic gene disruptions and gene overexpressions
T Akutsu, S Kuhara, O Maruyama, S Miyano
SODA 98, 695-702, 1998
1831998
A novel representation of protein sequences for prediction of subcellular location using support vector machines
S Matsuda, JP Vert, H Saigo, N Ueda, H Toh, T Akutsu
Protein Science 14 (11), 2804-2813, 2005
1712005
IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming
K Sato, Y Kato, M Hamada, T Akutsu, K Asai
Bioinformatics 27 (13), i85-i93, 2011
1642011
A system for identifying genetic networks from gene expression patterns produced by gene disruptions and overexpressions
T Akutsu, S Kuhara, O Maruyama, S Miyano
Genome Informatics 9, 151-160, 1998
1501998
Cascleave: towards more accurate prediction of caspase substrate cleavage sites
J Song, H Tan, H Shen, K Mahmood, SE Boyd, GI Webb, T Akutsu, ...
Bioinformatics 26 (6), 752-760, 2010
1482010
Algorithms for inferring qualitative models of biological networks
T AKUTSU, S MIYANO, S KUHARA
Biocomputing 2000, 293-304, 1999
1391999
iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites
J Song, Y Wang, F Li, T Akutsu, ND Rawlings, GI Webb, KC Chou
Briefings in bioinformatics 20 (2), 638-658, 2019
1342019
Dominating scale-free networks with variable scaling exponent: heterogeneous networks are not difficult to control
JC Nacher, T Akutsu
New Journal of Physics 14 (7), 073005, 2012
1322012
Biomacromolecules: Introduction to structure, function and informatics
CS Tsai
John Wiley & Sons, 2007
128*2007
KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains
KF Aoki, A Yamaguchi, N Ueda, T Akutsu, H Mamitsuka, S Goto, ...
Nucleic acids research 32 (suppl_2), W267-W272, 2004
1062004
Structural controllability of unidirectional bipartite networks
JC Nacher, T Akutsu
Scientific reports 3, 1647, 2013
1002013
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Articles 1–20