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Christina B Azodi
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Opening the black box: interpretable machine learning for geneticists
CB Azodi, J Tang, SH Shiu
Trends in genetics 36 (6), 442-455, 2020
2442020
Benchmarking parametric and machine learning models for genomic prediction of complex traits
CB Azodi, E Bolger, A McCarren, M Roantree, G de Los Campos, SH Shiu
G3: Genes, Genomes, Genetics 9 (11), 3691-3702, 2019
1082019
Transcriptome-based prediction of complex traits in maize
CB Azodi, J Pardo, R VanBuren, G de Los Campos, SH Shiu
The Plant Cell 32 (1), 139-151, 2020
792020
Comprehensive spatial analysis of the Borrelia burgdorferi lipoproteome reveals a compartmentalization bias toward the bacterial surface
AS Dowdell, MD Murphy, C Azodi, SK Swanson, L Florens, S Chen, ...
Journal of bacteriology 199 (6), 10.1128/jb. 00658-16, 2017
712017
Evolutionarily conserved hierarchical gene regulatory networks for plant salt stress response
TY Wu, HZ Goh, CB Azodi, S Krishnamoorthi, MJ Liu, D Urano
Nature Plants 7 (6), 787-799, 2021
442021
Optimizing expression quantitative trait locus mapping workflows for single-cell studies
ASE Cuomo, G Alvari, CB Azodi, Single-Cell eQTLGen Consortium, ...
Genome biology 22 (1), 188, 2021
38*2021
Putative cis-regulatory elements predict iron deficiency responses in Arabidopsis roots
B Schwarz, CB Azodi, SH Shiu, P Bauer
Plant physiology 182 (3), 1420-1439, 2020
342020
Cis-regulatory code for predicting plant cell-type transcriptional response to high salinity
S Uygun, CB Azodi, SH Shiu
Plant physiology 181 (4), 1739-1751, 2019
272019
Predictive models of spatial transcriptional response to high salinity
S Uygun, AE Seddon, CB Azodi, SH Shiu
Plant physiology 174 (1), 450-464, 2017
242017
Modeling temporal and hormonal regulation of plant transcriptional response to wounding
BM Moore, YS Lee, P Wang, C Azodi, E Grotewold, SH Shiu
The Plant Cell 34 (2), 867-888, 2022
212022
The cis-regulatory codes of response to combined heat and drought stress in Arabidopsis thaliana
CB Azodi, JP Lloyd, SH Shiu
NAR Genomics and Bioinformatics 2 (3), 2020
212020
Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication
NL Panchy, CB Azodi, EF Winship, RC O’Malley, SH Shiu
BMC Evolutionary Biology 19, 1-17, 2019
82019
Genetic models reveal historical patterns of sea lamprey population fluctuations within Lake Champlain
CC D’Aloia, CB Azodi, SP Sheldon, SC Trombulak, WR Ardren
PeerJ 3, e1369, 2015
82015
splatPop: simulating population scale single-cell RNA sequencing data
CB Azodi, L Zappia, A Oshlack, DJ McCarthy
Genome biology 22 (1), 341, 2021
52021
Benchmarking parametric and machine learning models for genomic prediction of complex traits. G3 (Bethesda) 9: 3691–3702
CB Azodi, E Bolger, A McCarren, M Roantree, G de los Campos
52019
Perceptions of emerging biotechnologies
CB Azodi, T Dietz
Environmental Research Letters 14 (11), 114018, 2019
42019
Evolutionary characteristics of intergenic transcribed regions indicate rare novel genes and widespread noisy transcription in the Poaceae
JP Lloyd, MJ Bowman, CB Azodi, RP Sowers, GD Moghe, KL Childs, ...
Scientific Reports 9 (1), 12122, 2019
4*2019
Interpretable Machine Learning in Plant Genomes: Studies in Modeling and Understanding Complex Biological Systems
CB Azodi
Michigan State University, 2019
2019
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Articles 1–18