| Whole-genome shotgun assembly and comparison of human genome assemblies S Istrail, GG Sutton, L Florea, AL Halpern, CM Mobarry, R Lippert, ... Proceedings of the National Academy of Sciences 101 (7), 1916-1921, 2004 | 277 | 2004 |
| Algorithms for computing approximate repetitions in musical sequences E Cambouropoulos, M Crochemore, C Iliopoulos, L Mouchard, Y Pinzon International Journal of Computer Mathematics 79 (11), 1135-1148, 2002 | 129 | 2002 |
| Dynamic extended suffix arrays M Salson, T Lecroq, M Léonard, L Mouchard Journal of Discrete Algorithms 8 (2), 241-257, 2010 | 79 | 2010 |
| Linear-time computation of minimal absent words using suffix array C Barton, A Heliou, L Mouchard, SP Pissis BMC bioinformatics 15, 1-10, 2014 | 52 | 2014 |
| String regularities with don't cares CS Iliopoulos, M Mohamed, L Mouchard, K Perdikuri, WF Smyth, ... Nord. J. Comput. 10 (1), 40-51, 2003 | 52 | 2003 |
| A four-stage algorithm for updating a Burrows–Wheeler transform M Salson, T Lecroq, M Léonard, L Mouchard Theoretical Computer Science 410 (43), 4350-4359, 2009 | 46 | 2009 |
| Distributed pattern matching using finite automata J Holub, CS Iliopoulos, B Melichar, L Mouchard Journal of Automata, Languages and Combinatorics 6 (2), 191-204, 2001 | 40 | 2001 |
| REAL: an efficient REad ALigner for next generation sequencing reads K Frousios, CS Iliopoulos, L Mouchard, SP Pissis, G Tischler Proceedings of the First ACM International Conference on Bioinformatics and …, 2010 | 39 | 2010 |
| Dealing with uncertainty and imprecision in image segmentation using belief function theory B Lelandais, I Gardin, L Mouchard, P Vera, S Ruan International Journal of Approximate Reasoning 55 (1), 376-387, 2014 | 31 | 2014 |
| Suffix tree of alignment: An efficient index for similar data JC Na, H Park, M Crochemore, J Holub, CS Iliopoulos, L Mouchard, ... Combinatorial Algorithms: 24th International Workshop, IWOCA 2013, Rouen …, 2013 | 29 | 2013 |
| A new approach to pattern matching in degenerate DNA/RNA sequences and distributed pattern matching CS Iliopoulos, L Mouchard, MS Rahman Mathematics in Computer Science 1, 557-569, 2008 | 29 | 2008 |
| Computation of repetitions and regularities of biologically weighted sequences M Christodoulakis, C Iliopoulos, L Mouchard, K Perdikuri, A Tsakalidis, ... Journal of Computational Biology 13 (6), 1214-1231, 2006 | 29 | 2006 |
| Segmentation of biological target volumes on multi-tracer PET images based on information fusion for achieving dose painting in radiotherapy B Lelandais, I Gardin, L Mouchard, P Vera, S Ruan Medical Image Computing and Computer-Assisted Intervention–MICCAI 2012: 15th …, 2012 | 27 | 2012 |
| Absent words in a sliding window with applications M Crochemore, A Héliou, G Kucherov, L Mouchard, SP Pissis, Y Ramusat Information and Computation 270, 104461, 2020 | 26 | 2020 |
| FM-index of alignment: A compressed index for similar strings JC Na, H Kim, H Park, T Lecroq, M Léonard, L Mouchard, K Park Theoretical Computer Science 638, 159-170, 2016 | 26 | 2016 |
| Parallelising the computation of minimal absent words C Barton, A Héliou, L Mouchard, SP Pissis Parallel Processing and Applied Mathematics: 11th International Conference …, 2016 | 26 | 2016 |
| Linear-time sequence comparison using minimal absent words & applications M Crochemore, G Fici, R Mercaş, SP Pissis LATIN 2016: Theoretical Informatics: 12th Latin American Symposium, Ensenada …, 2016 | 25 | 2016 |
| FM-index of alignment with gaps JC Na, H Kim, S Min, H Park, T Lecroq, M Leonard, L Mouchard, K Park Theoretical Computer Science 710, 148-157, 2018 | 23 | 2018 |
| Pattern matching on weighted sequences M Christodoulakis, CS Iliopoulos, L Mouchard, K Tsichlas Algorithms and Computational Methods for Biochemical and Evolutionary …, 2004 | 23 | 2004 |
| Computing the Repetitions in a Weighted Sequence. CS Iliopoulos, L Mouchard, K Perdikuri, AK Tsakalidis Stringology, 91-98, 2003 | 22 | 2003 |
