Juho Rousu
Juho Rousu
Professor, Department of Computer Science, Aalto University
Verified email at aalto.fi - Homepage
Cited by
Cited by
Searching molecular structure databases with tandem mass spectra using CSI: FingerID
K Dührkop, H Shen, M Meusel, J Rousu, S Böcker
Proceedings of the National Academy of Sciences 112 (41), 12580-12585, 2015
Kernel-based learning of hierarchical multilabel classification models
J Rousu, C Saunders, S Szedmak, J Shawe-Taylor
Journal of Machine Learning Research 7 (Jul), 1601-1626, 2006
General and efficient multisplitting of numerical attributes
T Elomaa, J Rousu
Machine learning 36 (3), 201-244, 1999
FiD: a software for ab initio structural identification of product ions from tandem mass spectrometric data
M Heinonen, A Rantanen, T Mielikäinen, J Kokkonen, J Kiuru, RA Ketola, ...
Rapid Communications in Mass Spectrometry: An International Journal Devoted …, 2008
Metabolite identification and molecular fingerprint prediction through machine learning
M Heinonen, H Shen, N Zamboni, J Rousu
Bioinformatics 28 (18), 2333-2341, 2012
Learning hierarchical multi-category text classification models
J Rousu, C Saunders, S Szedmak, J Shawe-Taylor
Proceedings of the 22nd international conference on Machine learning, 744-751, 2005
SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information
K Dührkop, M Fleischauer, M Ludwig, AA Aksenov, AV Melnik, M Meusel, ...
Nature methods 16 (4), 299-302, 2019
Critical assessment of small molecule identification 2016: automated methods
EL Schymanski, C Ruttkies, M Krauss, C Brouard, T Kind, K Dührkop, ...
Journal of cheminformatics 9 (1), 22, 2017
Meat processing plant microbiome and contamination patterns of cold-tolerant bacteria causing food safety and spoilage risks in the manufacture of vacuum-packaged cooked sausages
J Hultman, R Rahkila, J Ali, J Rousu, KJ Björkroth
Applied and environmental microbiology 81 (20), 7088-7097, 2015
metaCCA: summary statistics-based multivariate meta-analysis of genome-wide association studies using canonical correlation analysis
A Cichonska, J Rousu, P Marttinen, AJ Kangas, P Soininen, T Lehtimäki, ...
Bioinformatics 32 (13), 1981-1989, 2016
Metabolite identification through multiple kernel learning on fragmentation trees
H Shen, K Dührkop, S Böcker, J Rousu
Bioinformatics 30 (12), i157-i164, 2014
Inferring branching pathways in genome-scale metabolic networks
E Pitkänen, P Jouhten, J Rousu
BMC systems biology 3 (1), 103, 2009
Comparative genome-scale reconstruction of gapless metabolic networks for present and ancestral species
E Pitkänen, P Jouhten, J Hou, MF Syed, P Blomberg, J Kludas, M Oja, ...
PLoS Comput Biol 10 (2), e1003465, 2014
Efficient multisplitting revisited: Optima-preserving elimination of partition candidates
T Elomaa, J Rousu
Data Mining and Knowledge Discovery 8 (2), 97-126, 2004
Towards structured output prediction of enzyme function
K Astikainen, L Holm, E Pitkänen, S Szedmak, J Rousu
BMC proceedings 2 (S4), S2, 2008
Efficient Computation of Gapped Substring Kernels on Large Alphabets.
J Rousu, J Shawe-Taylor
Journal of Machine Learning Research 6 (9), 2005
An analytic and systematic framework for estimating metabolic flux ratios from 13C tracer experiments
A Rantanen, J Rousu, P Jouhten, N Zamboni, H Maaheimo, E Ukkonen
BMC bioinformatics 9 (1), 266, 2008
Fast metabolite identification with input output kernel regression
C Brouard, H Shen, K Dührkop, F d'Alché-Buc, S Böcker, J Rousu
Bioinformatics 32 (12), i28-i36, 2016
Computational methods for metabolic reconstruction
E Pitkänen, J Rousu, E Ukkonen
Current opinion in biotechnology 21 (1), 70-77, 2010
Non-stationary gaussian process regression with hamiltonian monte carlo
M Heinonen, H Mannerström, J Rousu, S Kaski, H Lähdesmäki
Artificial Intelligence and Statistics, 732-740, 2016
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