| Searching molecular structure databases with tandem mass spectra using CSI: FingerID K Dührkop, H Shen, M Meusel, J Rousu, S Böcker Proceedings of the National Academy of Sciences 112 (41), 12580-12585, 2015 | 323 | 2015 |
| Kernel-based learning of hierarchical multilabel classification models J Rousu, C Saunders, S Szedmak, J Shawe-Taylor Journal of Machine Learning Research 7 (Jul), 1601-1626, 2006 | 309 | 2006 |
| General and efficient multisplitting of numerical attributes T Elomaa, J Rousu Machine learning 36 (3), 201-244, 1999 | 213 | 1999 |
| FiD: a software for ab initio structural identification of product ions from tandem mass spectrometric data M Heinonen, A Rantanen, T Mielikäinen, J Kokkonen, J Kiuru, RA Ketola, ... Rapid Communications in Mass Spectrometry: An International Journal Devoted …, 2008 | 129 | 2008 |
| Metabolite identification and molecular fingerprint prediction through machine learning M Heinonen, H Shen, N Zamboni, J Rousu Bioinformatics 28 (18), 2333-2341, 2012 | 125 | 2012 |
| Learning hierarchical multi-category text classification models J Rousu, C Saunders, S Szedmak, J Shawe-Taylor Proceedings of the 22nd international conference on Machine learning, 744-751, 2005 | 115 | 2005 |
| SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information K Dührkop, M Fleischauer, M Ludwig, AA Aksenov, AV Melnik, M Meusel, ... Nature methods 16 (4), 299-302, 2019 | 107 | 2019 |
| Critical assessment of small molecule identification 2016: automated methods EL Schymanski, C Ruttkies, M Krauss, C Brouard, T Kind, K Dührkop, ... Journal of cheminformatics 9 (1), 22, 2017 | 89 | 2017 |
| Meat processing plant microbiome and contamination patterns of cold-tolerant bacteria causing food safety and spoilage risks in the manufacture of vacuum-packaged cooked sausages J Hultman, R Rahkila, J Ali, J Rousu, KJ Björkroth Applied and environmental microbiology 81 (20), 7088-7097, 2015 | 79 | 2015 |
| metaCCA: summary statistics-based multivariate meta-analysis of genome-wide association studies using canonical correlation analysis A Cichonska, J Rousu, P Marttinen, AJ Kangas, P Soininen, T Lehtimäki, ... Bioinformatics 32 (13), 1981-1989, 2016 | 74 | 2016 |
| Metabolite identification through multiple kernel learning on fragmentation trees H Shen, K Dührkop, S Böcker, J Rousu Bioinformatics 30 (12), i157-i164, 2014 | 70 | 2014 |
| Inferring branching pathways in genome-scale metabolic networks E Pitkänen, P Jouhten, J Rousu BMC systems biology 3 (1), 103, 2009 | 68 | 2009 |
| Comparative genome-scale reconstruction of gapless metabolic networks for present and ancestral species E Pitkänen, P Jouhten, J Hou, MF Syed, P Blomberg, J Kludas, M Oja, ... PLoS Comput Biol 10 (2), e1003465, 2014 | 59 | 2014 |
| Efficient multisplitting revisited: Optima-preserving elimination of partition candidates T Elomaa, J Rousu Data Mining and Knowledge Discovery 8 (2), 97-126, 2004 | 59 | 2004 |
| Towards structured output prediction of enzyme function K Astikainen, L Holm, E Pitkänen, S Szedmak, J Rousu BMC proceedings 2 (S4), S2, 2008 | 58 | 2008 |
| Efficient Computation of Gapped Substring Kernels on Large Alphabets. J Rousu, J Shawe-Taylor Journal of Machine Learning Research 6 (9), 2005 | 57 | 2005 |
| An analytic and systematic framework for estimating metabolic flux ratios from 13C tracer experiments A Rantanen, J Rousu, P Jouhten, N Zamboni, H Maaheimo, E Ukkonen BMC bioinformatics 9 (1), 266, 2008 | 51 | 2008 |
| Fast metabolite identification with input output kernel regression C Brouard, H Shen, K Dührkop, F d'Alché-Buc, S Böcker, J Rousu Bioinformatics 32 (12), i28-i36, 2016 | 47 | 2016 |
| Computational methods for metabolic reconstruction E Pitkänen, J Rousu, E Ukkonen Current opinion in biotechnology 21 (1), 70-77, 2010 | 45 | 2010 |
| Non-stationary gaussian process regression with hamiltonian monte carlo M Heinonen, H Mannerström, J Rousu, S Kaski, H Lähdesmäki Artificial Intelligence and Statistics, 732-740, 2016 | 43 | 2016 |
Tapio ElomaaVerified email at tut.fi
