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| Conserved role of intragenic DNA methylation in regulating alternative promoters AK Maunakea, RP Nagarajan, M Bilenky, TJ Ballinger, C D’Souza, ... Nature 466 (7303), 253-257, 2010 | 2019 | 2010 |
| Hereditary diffuse gastric cancer syndrome: CDH1 mutations and beyond S Hansford, P Kaurah, H Li-Chang, M Woo, J Senz, H Pinheiro, ... JAMA oncology 1 (1), 23-32, 2015 | 767 | 2015 |
| Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution P Eirew, A Steif, J Khattra, G Ha, D Yap, H Farahani, K Gelmon, S Chia, ... Nature 518 (7539), 422-426, 2015 | 673 | 2015 |
| Determinants of targeting by endogenous and exogenous microRNAs and siRNAs CB Nielsen, N Shomron, R Sandberg, E Hornstein, J Kitzman, CB Burge Rna 13 (11), 1894-1910, 2007 | 546 | 2007 |
| De novo transcriptome assembly with ABySS I Birol, SD Jackman, CB Nielsen, JQ Qian, R Varhol, G Stazyk, RD Morin, ... Bioinformatics 25 (21), 2872-2877, 2009 | 524 | 2009 |
| Biased chromatin signatures around polyadenylation sites and exons N Spies, CB Nielsen, RA Padgett, CB Burge Molecular cell 36 (2), 245-254, 2009 | 473 | 2009 |
| Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer A McPherson, A Roth, E Laks, T Masud, A Bashashati, AW Zhang, G Ha, ... Nature genetics 48 (7), 758-767, 2016 | 364 | 2016 |
| The Human Epigenome Browser at Washington University X Zhou, B Maricque, M Xie, D Li, V Sundaram, EA Martin, BC Koebbe, ... Nature Methods 8 (12), 989-990, 2011 | 348 | 2011 |
| Interfaces of malignant and immunologic clonal dynamics in ovarian cancer AW Zhang, A McPherson, K Milne, DR Kroeger, PT Hamilton, A Miranda, ... Cell 173 (7), 1755-1769. e22, 2018 | 329 | 2018 |
| Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs AKL Leung, AG Young, A Bhutkar, GX Zheng, AD Bosson, CB Nielsen, ... Nature structural & molecular biology 18 (2), 237-244, 2011 | 293 | 2011 |
| Histological transformation and progression in follicular lymphoma: a clonal evolution study R Kridel, FC Chan, A Mottok, M Boyle, P Farinha, K Tan, B Meissner, ... PLoS medicine 13 (12), e1002197, 2016 | 250 | 2016 |
| Visualizing genomes: techniques and challenges CB Nielsen, M Cantor, I Dubchak, D Gordon, T Wang Nature methods 7 (Suppl 3), S5-S15, 2010 | 235 | 2010 |
| Clonal decomposition and DNA replication states defined by scaled single-cell genome sequencing E Laks, A McPherson, H Zahn, D Lai, A Steif, J Brimhall, J Biele, B Wang, ... Cell 179 (5), 1207-1221. e22, 2019 | 217 | 2019 |
| Visualizing biological data—now and in the future SI O'Donoghue, AC Gavin, N Gehlenborg, DS Goodsell, JK Hériché, ... Nature methods 7 (3), S2-S4, 2010 | 193 | 2010 |
| Patterns of intron gain and loss in fungi CB Nielsen, B Friedman, B Birren, CB Burge, JE Galagan PLoS biology 2 (12), e422, 2004 | 153 | 2004 |
| Clonal genotype and population structure inference from single-cell tumor sequencing A Roth, A McPherson, E Laks, J Biele, D Yap, A Wan, MA Smith, ... Nature methods 13 (7), 573-576, 2016 | 128 | 2016 |
| ABySS-Explorer: visualizing genome sequence assemblies CB Nielsen, SD Jackman, I Birol, SJM Jones IEEE transactions on visualization and computer graphics 15 (6), 881-888, 2009 | 110 | 2009 |
| E-scape: interactive visualization of single-cell phylogenetics and cancer evolution MA Smith, CB Nielsen, FC Chan, A McPherson, A Roth, H Farahani, ... Nature methods 14 (6), 549-550, 2017 | 48 | 2017 |
| Variant view: visualizing sequence variants in their gene context JA Ferstay, CB Nielsen, T Munzner IEEE transactions on visualization and computer graphics 19 (12), 2546-2555, 2013 | 41 | 2013 |
