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Jason W. Shapiro
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Evolution of mutualism from parasitism in experimental virus populations
JW Shapiro, PE Turner
Evolution 72 (3), 707-712, 2018
502018
Genomic survey of E. coli from the bladders of women with and without lower urinary tract symptoms
A Garretto, T Miller-Ensminger, A Ene, Z Merchant, A Shah, A Gerodias, ...
Frontiers in microbiology, 2094, 2020
492020
Genomes of Gardnerella Strains Reveal an Abundance of Prophages within the Bladder Microbiome
K Malki, JW Shapiro, TK Price, EE Hilt, K Thomas-White, T Sircar, ...
PloS one 11 (11), e0166757, 2016
482016
Gene co-occurrence networks reflect bacteriophage ecology and evolution
JW Shapiro, C Putonti
MBio 9 (2), 10.1128/mbio. 01870-17, 2018
472018
Evolution of parasitism and mutualism between filamentous phage M13 and Escherichia coli
JW Shapiro, ESCP Williams, PE Turner
PeerJ 4, e2060, 2016
412016
Freshwater Metaviromics and Bacteriophages: A Current Assessment of the State of the Art in Relation to Bioinformatic Challenges
K Bruder, K Malki, A Cooper, E Sible, JW Shapiro, SC Watkins, C Putonti
Evolutionary Bioinformatics Online 12 (Suppl 1), 25, 2016
402016
The impact of transmission mode on the evolution of benefits provided by microbial symbionts
JW Shapiro, PE Turner
Ecology and Evolution 4 (17), 3350-3361, 2014
372014
Adding biotic complexity alters the metabolic benefits of mutualism
WR Harcombe, A Betts, JW Shapiro, CJ Marx
Evolution 70 (8), 1871-1881, 2016
292016
Checkpoint blockade–Induced dermatitis and colitis are dominated by tissue-resident memory T cells and Th1/Tc1 Cytokines
R Reschke, JW Shapiro, J Yu, SJ Rouhani, DJ Olson, Y Zha, TF Gajewski
Cancer Immunology Research 10 (10), 1167-1174, 2022
242022
Introducing Lu-1, a Novel Lactobacillus jensenii Phage Abundant in the Urogenital Tract
T Miller-Ensminger, R Mormando, L Maskeri, JW Shapiro, AJ Wolfe, ...
Plos one 15 (6), e0234159, 2020
172020
Comparative genomic study of Lactobacillus jensenii and the newly defined Lactobacillus mulieris species identifies species-specific functionality
C Putonti, JW Shapiro, A Ene, O Tsibere, AJ Wolfe
Msphere 5 (4), 10.1128/msphere. 00560-20, 2020
152020
UPΦ phages, a new group of filamentous phages found in several members of Enterobacteriales
JW Shapiro, C Putonti
Virus Evolution 6 (1), veaa030, 2020
92020
Rephine. r: a pipeline for correcting gene calls and clusters to improve phage pangenomes and phylogenies
JW Shapiro, C Putonti
PeerJ 9, e11950, 2021
22021
Coevolution along a parasitism-mutualism continuum: Theory and experiments with phage and bacteria
JW Shapiro
YALE UNIVERSITY, 2014
12014
Germinal center BCR maturation in appendicitis reveals a role for antigen-specific adaptive immune responses during disease
E Stewart, Z Taghvaei, C Leon, J Shapiro, L Zhu, L Alpert, K Turaga, ...
bioRxiv, 2024.01. 31.578312, 2024
2024
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