Jakob Bunkenborg
Jakob Bunkenborg
Scientist at Alphalyse
Verified email at alphalyse.com
TitleCited byYear
Mammalian Sir2 homolog SIRT3 regulates global mitochondrial lysine acetylation
DB Lombard, FW Alt, HL Cheng, J Bunkenborg, RS Streeper, ...
Molecular and cellular biology 27 (24), 8807-8814, 2007
9492007
Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria
VK Mootha, J Bunkenborg, JV Olsen, M Hjerrild, JR Wisniewski, E Stahl, ...
Cell 115 (5), 629-640, 2003
8882003
Reversible lysine acetylation controls the activity of the mitochondrial enzyme acetyl-CoA synthetase 2
B Schwer, J Bunkenborg, RO Verdin, JS Andersen, E Verdin
Proceedings of the National Academy of Sciences 103 (27), 10224-10229, 2006
6222006
Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics
VK Mootha, P Lepage, K Miller, J Bunkenborg, M Reich, M Hjerrild, ...
Proceedings of the National Academy of Sciences 100 (2), 605-610, 2003
5642003
A new strategy for identification of N-glycosylated proteins and unambiguous assignment of their glycosylation sites using HILIC enrichment and partial deglycosylation
P Hägglund, J Bunkenborg, F Elortza, ON Jensen, P Roepstorff
Journal of proteome research 3 (3), 556-566, 2004
4562004
SIRT3 deacetylates mitochondrial 3-hydroxy-3-methylglutaryl CoA synthase 2 and regulates ketone body production
T Shimazu, MD Hirschey, L Hua, KE Dittenhafer-Reed, B Schwer, ...
Cell metabolism 12 (6), 654-661, 2010
3332010
A proteomic approach for identification of secreted proteins during the differentiation of 3T3-L1 preadipocytes to adipocytes
I Kratchmarova, DE Kalume, B Blagoev, PE Scherer, AV Podtelejnikov, ...
Molecular & Cellular Proteomics 1 (3), 213-222, 2002
3122002
MSQuant, an open source platform for mass spectrometry-based quantitative proteomics
P Mortensen, JW Gouw, JV Olsen, SE Ong, KTG Rigbolt, J Bunkenborg, ...
Journal of proteome research 9 (1), 393-403, 2009
2592009
Comprehensive proteomic analysis of human pancreatic juice
M Grønborg, J Bunkenborg, TZ Kristiansen, ON Jensen, CJ Yeo, ...
Journal of proteome research 3 (5), 1042-1055, 2004
2292004
Site-specific phosphorylation dynamics of the nuclear proteome during the DNA damage response
MV Bennetzen, DH Larsen, J Bunkenborg, J Bartek, J Lukas, ...
Molecular & Cellular Proteomics 9 (6), 1314-1323, 2010
2042010
Screening for N‐glycosylated proteins by liquid chromatography mass spectrometry
J Bunkenborg, BJ Pilch, AV Podtelejnikov, JR Wiśniewski
Proteomics 4 (2), 454-465, 2004
2042004
A proteomic analysis of human bile
TZ Kristiansen, J Bunkenborg, M Gronborg, H Molina, PJ Thuluvath, ...
Molecular & Cellular Proteomics 3 (7), 715-728, 2004
1592004
VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins
R Matthiesen, MB Trelle, P Højrup, J Bunkenborg, ON Jensen
Journal of proteome research 4 (6), 2338-2347, 2005
1392005
The human cap-binding complex is functionally connected to the nuclear RNA exosome
PR Andersen, M Domanski, MS Kristiansen, H Storvall, E Ntini, ...
Nature structural & molecular biology 20 (12), 1367, 2013
1252013
Quantitative proteomic assessment of very early cellular signaling events
J Dengjel, V Akimov, JV Olsen, J Bunkenborg, M Mann, B Blagoev, ...
Nature biotechnology 25 (5), 566, 2007
1192007
An enzymatic deglycosylation scheme enabling identification of core fucosylated N-glycans and O-glycosylation site mapping of human plasma proteins
P Hägglund, R Matthiesen, F Elortza, P Højrup, P Roepstorff, ON Jensen, ...
Journal of proteome research 6 (8), 3021-3031, 2007
1102007
Identification of thioredoxin disulfide targets using a quantitative proteomics approach based on isotope-coded affinity tags
P Hägglund, J Bunkenborg, K Maeda, B Svensson
Journal of proteome research 7 (12), 5270-5276, 2008
1092008
Modification-specific proteomics of plasma membrane proteins: identification and characterization of glycosylphosphatidylinositol-anchored proteins released upon phospholipase …
F Elortza, S Mohammed, J Bunkenborg, LJ Foster, TS Nühse, U Brodbeck, ...
Journal of proteome research 5 (4), 935-943, 2006
1092006
Identification of autophagosome-associated proteins and regulators by quantitative proteomic analysis and genetic screens
J Dengjel, M Høyer-Hansen, MO Nielsen, T Eisenberg, LM Harder, ...
Molecular & Cellular Proteomics 11 (3), M111. 014035, 2012
982012
Up-regulated proteins in the fluid bathing the tumour cell microenvironment as potential serological markers for early detection of cancer of the breast
P Gromov, I Gromova, J Bunkenborg, T Cabezon, JMA Moreira, ...
Molecular oncology 4 (1), 65-89, 2010
952010
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Articles 1–20