| Temperature sensitivity of soil respiration rates enhanced by microbial community response K Karhu, MD Auffret, JAJ Dungait, DW Hopkins, JI Prosser, BK Singh, ... Nature 513 (7516), 81-84, 2014 | 658 | 2014 |
| Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen RD Stewart, MD Auffret, A Warr, AH Wiser, MO Press, KW Langford, ... Nature communications 9 (1), 870, 2018 | 466 | 2018 |
| Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery RD Stewart, MD Auffret, A Warr, AW Walker, R Roehe, M Watson Nature biotechnology 37 (8), 953-961, 2019 | 404 | 2019 |
| The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle MD Auffret, RJ Dewhurst, CA Duthie, JA Rooke, R John Wallace, ... Microbiome 5, 1-11, 2017 | 154 | 2017 |
| Degradation of a Mixture of Hydrocarbons, Gasoline, and Diesel Oil Additives by Rhodococcus aetherivorans and Rhodococcus wratislaviensis M Auffret, D Labbé, G Thouand, CW Greer, F Fayolle-Guichard Applied and environmental microbiology 75 (24), 7774-7782, 2009 | 146 | 2009 |
| Impact of water quality on the bacterial populations and off-flavours in recirculating aquaculture systems M Auffret, É Yergeau, A Pilote, É Proulx, D Proulx, CW Greer, ... FEMS microbiology ecology 84 (2), 235-247, 2013 | 81 | 2013 |
| Importance of Rhodococcus strains in a bacterial consortium degrading a mixture of hydrocarbons, gasoline, and diesel oil additives revealed by … MD Auffret, E Yergeau, D Labbé, F Fayolle-Guichard, CW Greer Applied microbiology and biotechnology 99, 2419-2430, 2015 | 79 | 2015 |
| Identification, Comparison, and Validation of Robust Rumen Microbial Biomarkers for Methane Emissions Using Diverse Bos Taurus Breeds and Basal Diets MD Auffret, R Stewart, RJ Dewhurst, CA Duthie, JA Rooke, RJ Wallace, ... Frontiers in Microbiology 8, 2642, 2018 | 77 | 2018 |
| Establishment of a real-time PCR method for quantification of geosmin-producing Streptomyces spp. in recirculating aquaculture systems M Auffret, A Pilote, É Proulx, D Proulx, G Vandenberg, R Villemur Water research 45 (20), 6753-6762, 2011 | 69 | 2011 |
| Identification of complex rumen microbiome interaction within diverse functional niches as mechanisms affecting the variation of methane emissions in bovine M Martínez-Álvaro, MD Auffret, RD Stewart, RJ Dewhurst, CA Duthie, ... Frontiers in microbiology 11, 506670, 2020 | 64 | 2020 |
| Identification of rumen microbial genes involved in pathways linked to appetite, growth, and feed conversion efficiency in cattle J Lima, MD Auffret, RD Stewart, RJ Dewhurst, CA Duthie, TJ Snelling, ... Frontiers in Genetics 10, 701, 2019 | 58 | 2019 |
| The role of microbial community composition in controlling soil respiration responses to temperature MD Auffret, K Karhu, A Khachane, JAJ Dungait, F Fraser, DW Hopkins, ... PLoS One 11 (10), e0165448, 2016 | 56 | 2016 |
| Temporal stability of the rumen microbiota in beef cattle, and response to diet and supplements TJ Snelling, MD Auffret, CA Duthie, RD Stewart, M Watson, RJ Dewhurst, ... Animal Microbiome 1, 1-14, 2019 | 37 | 2019 |
| MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs) RD Stewart, MD Auffret, TJ Snelling, R Roehe, M Watson Bioinformatics 35 (12), 2150-2152, 2019 | 37 | 2019 |
| Identification of microbial genetic capacities and potential mechanisms within the rumen microbiome explaining differences in beef cattle feed efficiency MD Auffret, RD Stewart, RJ Dewhurst, CA Duthie, M Watson, R Roehe Frontiers in microbiology 11, 527770, 2020 | 34 | 2020 |
| Bovine host genome acts on rumen microbiome function linked to methane emissions M Martínez-Álvaro, MD Auffret, CA Duthie, RJ Dewhurst, MA Cleveland, ... Communications biology 5 (1), 350, 2022 | 33 | 2022 |
| Open prediction of polysaccharide utilisation loci (PUL) in 5414 public Bacteroidetes genomes using PULpy RD Stewart, MD Auffret, R Roehe, M Watson BioRxiv, 421024, 2018 | 33 | 2018 |
| Reducing geosmin off-flavor compounds and waste outputs through dietary phosphorus management in rainbow trout aquaculture P Sarker, A Pilote, M Auffret, É Proulx, R Villemur, MH Deschamps, ... Aquaculture Environment Interactions 6 (1), 105-117, 2014 | 29 | 2014 |
| Unravelling the role of rumen microbial communities, genes, and activities on milk fatty acid profile using a combination of omics approaches S Stergiadis, I Cabeza-Luna, M Mora-Ortiz, RD Stewart, RJ Dewhurst, ... Frontiers in microbiology 11, 590441, 2021 | 20 | 2021 |
| Impact of seasonal temperature transition, alkalinity and other abiotic factors on the persistence of viruses in swine and dairy manures MD Auffret, J Brassard, TH Jones, N Gagnon, MJ Gagné, V Muehlhauser, ... Science of the total Environment 659, 640-648, 2019 | 15 | 2019 |
Philip A. WookeyProfessor in Ecosystem Ecology, University of StirlingVerified email at stir.ac.uk
