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Alexandria Volkening
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Modelling stripe formation in zebrafish: an agent-based approach
A Volkening, B Sandstede
Journal of the Royal Society Interface 12 (112), 20150812, 2015
912015
Topological data analysis of zebrafish patterns
MR McGuirl, A Volkening, B Sandstede
Proceedings of the National Academy of Sciences 117 (10), 5113-5124, 2020
902020
Iridophores as a source of robustness in zebrafish stripes and variability in Danio patterns
A Volkening, B Sandstede
Nature communications 9 (1), 3231, 2018
632018
Forecasting elections using compartmental models of infection
A Volkening, DF Linder, MA Porter, GA Rempala
SIAM Review 62 (4), 837-865, 2020
342020
Emergence of anti-cancer drug resistance: exploring the importance of the microenvironmental niche via a spatial model
JL Gevertz, Z Aminzare, KA Norton, J Pérez-Velázquez, A Volkening, ...
Applications of dynamical systems in biology and medicine, 1-34, 2015
202015
Noise-induced tipping under periodic forcing: Preferred tipping phase in a non-adiabatic forcing regime
Y Chen, JA Gemmer, M Silber, A Volkening
Chaos: An Interdisciplinary Journal of Nonlinear Science 29 (4), 2019
182019
Linking genotype, cell behavior, and phenotype: multidisciplinary perspectives with a basis in zebrafish patterns
A Volkening
Current Opinion in Genetics & Development 63, 78-85, 2020
172020
Modeling stripe formation on growing zebrafish tailfins
A Volkening, MR Abbott, N Chandra, B Dubois, F Lim, D Sexton, ...
Bulletin of mathematical biology 82, 1-33, 2020
142020
Topological data analysis of spatial patterning in heterogeneous cell populations: clustering and sorting with varying cell-cell adhesion
D Bhaskar, WY Zhang, A Volkening, B Sandstede, IY Wong
npj Systems Biology and Applications 9 (1), 43, 2023
82023
Quantifying different modeling frameworks using topological data analysis: a case study with zebrafish patterns
E Cleveland, A Zhu, B Sandstede, A Volkening
SIAM Journal on Applied Dynamical Systems 22 (4), 3233-3266, 2023
12023
A primer on data-driven modeling of complex social systems
A Volkening
arXiv preprint arXiv:2210.08636, 2022
12022
Single cell-derived multicellular meristem: insights into male-to-hermaphrodite conversion and de novo meristem formation in Ceratopteris
X Yang, A Yan, X Liu, A Volkening, Y Zhou
Development 152 (3), 2025
2025
How time and pollster history affect US election forecasts under a compartmental modeling approach
R Branstetter, S Chian, J Cromp, WL He, CM Lee, M Liu, E Mansell, ...
arXiv preprint arXiv:2411.01730, 2024
2024
Linking discrete and continuous models of cell birth and migration
WD Martinson, A Volkening, M Schmidtchen, C Venkataraman, JA Carrillo
Royal Society Open Science 11 (7), 232002, 2024
2024
Methods for quantifying self-organization in biology: a forward-looking survey and tutorial
A Volkening
arXiv preprint arXiv:2407.10832, 2024
2024
Supplementary Information for “Linking discrete and continuous models of cell birth and migration”
WD Martinson, A Volkening, M Schmidtchen, C Venkataraman, JA Carrillo
2024
How do classroom-turnover times depend on lecture-hall size?
J Benson, M Bessonov, K Burke, S Cassani, MV Ciocanel, DB Cooney, ...
arXiv preprint arXiv:2206.06199, 2022
2022
What's math got to do with patterns in fish?
B Shirman, A Volkening
arXiv preprint arXiv:2201.08692, 2021
2021
Influenza spread on context-specific networks lifted from interaction-based diary data
K Mallory, J Rubin Abrams, A Schwartz, MV Ciocanel, A Volkening, ...
Royal Society Open Science 8 (1), 191876, 2021
2021
How Zebrafish Get Their Stripes... or Spots
A Volkening, B Sandstede
Collections 53 (02), 2020
2020
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