Fritz J Sedlazeck
Fritz J Sedlazeck
Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston TX 77030
Verified email at - Homepage
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Phased diploid genome assembly with single-molecule real-time sequencing
CS Chin, P Peluso, FJ Sedlazeck, M Nattestad, GT Concepcion, A Clum, ...
Nature methods 13 (12), 1050-1054, 2016
GenomeScope: fast reference-free genome profiling from short reads
GW Vurture, FJ Sedlazeck, M Nattestad, CJ Underwood, H Fang, ...
Bioinformatics 33 (14), 2202-2204, 2017
Accurate detection of complex structural variations using single-molecule sequencing
FJ Sedlazeck, P Rescheneder, M Smolka, H Fang, M Nattestad, ...
Nature methods 15 (6), 461-468, 2018
The pineapple genome and the evolution of CAM photosynthesis
R Ming, R VanBuren, CM Wai, H Tang, MC Schatz, JE Bowers, E Lyons, ...
Nature genetics 47 (12), 1435-1442, 2015
Updating benchtop sequencing performance comparison
S Jünemann, FJ Sedlazeck, K Prior, A Albersmeier, U John, J Kalinowski, ...
Nature biotechnology 31 (4), 294-296, 2013
NextGenMap: fast and accurate read mapping in highly polymorphic genomes
FJ Sedlazeck, P Rescheneder, A Von Haeseler
Bioinformatics 29 (21), 2790-2791, 2013
Piercing the dark matter: bioinformatics of long-range sequencing and mapping
FJ Sedlazeck, H Lee, CA Darby, MC Schatz
Nature Reviews Genetics 19 (6), 329-346, 2018
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Nature biotechnology 37 (10), 1155-1162, 2019
Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast
DC Jeffares, C Jolly, M Hoti, D Speed, L Shaw, C Rallis, F Balloux, ...
Nature communications 8 (1), 1-11, 2017
Chromosomal-level assembly of the Asian seabass genome using long sequence reads and multi-layered scaffolding
S Vij, H Kuhl, IS Kuznetsova, A Komissarov, AA Yurchenko, ...
PLoS genetics 12 (4), e1005954, 2016
Adenosine deaminases that act on RNA induce reproducible changes in abundance and sequence of embryonic miRNAs
C Vesely, S Tauber, FJ Sedlazeck, A von Haeseler, MF Jantsch
Genome research 22 (8), 1468-1476, 2012
The genomic basis of circadian and circalunar timing adaptations in a midge
TS Kaiser, B Poehn, D Szkiba, M Preussner, FJ Sedlazeck, A Zrim, ...
Nature 540 (7631), 69-73, 2016
Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line
M Nattestad, S Goodwin, K Ng, T Baslan, FJ Sedlazeck, P Rescheneder, ...
Genome research 28 (8), 1126-1135, 2018
ADAR2 induces reproducible changes in sequence and abundance of mature microRNAs in the mouse brain
C Vesely, S Tauber, FJ Sedlazeck, M Tajaddod, A Haeseler, MF Jantsch
Nucleic acids research 42 (19), 12155-12168, 2014
RaGOO: fast and accurate reference-guided scaffolding of draft genomes
M Alonge, S Soyk, S Ramakrishnan, X Wang, S Goodwin, FJ Sedlazeck, ...
Genome biology 20 (1), 1-17, 2019
A multi-task convolutional deep neural network for variant calling in single molecule sequencing
R Luo, FJ Sedlazeck, TW Lam, MC Schatz
Nature communications 10 (1), 1-11, 2019
The Candida albicans histone acetyltransferase Hat1 regulates stress resistance and virulence via distinct chromatin assembly pathways
M Tscherner, F Zwolanek, S Jenull, FJ Sedlazeck, A Petryshyn, IE Frohner, ...
PLoS Pathog 11 (10), e1005218, 2015
Advanced methylome analysis after bisulfite deep sequencing: an example in Arabidopsis
HQ Dinh, M Dubin, FJ Sedlazeck, N Lettner, OM Scheid, A von Haeseler
PloS one 7 (7), e41528, 2012
Teaser: Individualized benchmarking and optimization of read mapping results for NGS data
M Smolka, P Rescheneder, MC Schatz, A Von Haeseler, FJ Sedlazeck
Genome biology 16 (1), 1-10, 2015
LRSim: a linked-reads simulator generating insights for better genome partitioning
R Luo, FJ Sedlazeck, CA Darby, SM Kelly, MC Schatz
Computational and structural biotechnology journal 15, 478-484, 2017
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