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Thomas J. Poorten
Thomas J. Poorten
Bioinformatic Scientist, Pairwise Plants
Verified email at ucdavis.edu
Title
Cited by
Cited by
Year
Origin and evolution of the octoploid strawberry genome
PP Edger, TJ Poorten, R VanBuren, MA Hardigan, M Colle, MR McKain, ...
Nature genetics 51 (3), 541-547, 2019
5382019
Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data
EB Rosenblum, TY James, KR Zamudio, TJ Poorten, D Ilut, D Rodriguez, ...
Proceedings of the National Academy of Sciences 110 (23), 9385-9390, 2013
3232013
Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity
PP Edger, R VanBuren, M Colle, TJ Poorten, CM Wai, CE Niederhuth, ...
Gigascience 7 (2), gix124, 2018
2342018
Genome-wide transcriptional response of Silurana (Xenopus) tropicalis to infection with the deadly chytrid fungus
EB Rosenblum, TJ Poorten, M Settles, GK Murdoch, J Robert, N Maddox, ...
PloS one 4 (8), e6494, 2009
1342009
The deadly chytrid fungus: a story of an emerging pathogen
EB Rosenblum, J Voyles, TJ Poorten, JE Stajich
PLoS Pathogens 6 (1), e1000550, 2010
1122010
Only skin deep: shared genetic response to the deadly chytrid fungus in susceptible frog species
EB Rosenblum, TJ Poorten, M Settles, GK Murdoch
Molecular ecology 21 (13), 3110-3120, 2012
1112012
Correlates of virulence in a frog-killing fungal pathogen: evidence from a California amphibian decline
J Piovia-Scott, K Pope, S Joy Worth, EB Rosenblum, T Poorten, ...
The ISME Journal 9 (7), 1570-1578, 2015
742015
Genome-Wide Association Mapping Uncovers Fw1, a Dominant Gene Conferring Resistance to Fusarium Wilt in Strawberry
DDA Pincot, TJ Poorten, MA Hardigan, JM Harshman, CB Acharya, ...
G3: Genes, Genomes, Genetics 8 (5), 1817-1828, 2018
652018
Substrate-specific gene expression in Batrachochytrium dendrobatidis, the chytrid pathogen of amphibians
EB Rosenblum, TJ Poorten, S Joneson, M Settles
PloS one 7 (11), e49924, 2012
542012
Genomic Correlates of Virulence Attenuation in the Deadly Amphibian Chytrid Fungus, Batrachochytrium dendrobatidis
JM Refsnider, TJ Poorten, PF Langhammer, PA Burrowes, EB Rosenblum
G3: Genes, Genomes, Genetics 5 (11), 2291-2298, 2015
472015
A molecular perspective: biology of the emerging pathogen Batrachochytrium dendrobatidis
EB Rosenblum, MC Fisher, TY James, JE Stajich, JE Longcore, LR Gentry, ...
Diseases of aquatic organisms 92 (2-3), 131-147, 2010
442010
Unlocking the story in the swab: A new genotyping assay for the amphibian chytrid fungus Batrachochytrium dendrobatidis
AQ Byrne, AP Rothstein, TJ Poorten, J Erens, ML Settles, EB Rosenblum
Molecular ecology resources 17 (6), 1283-1292, 2017
412017
Comparative study of host response to chytridiomycosis in a susceptible and a resistant toad species
TJ Poorten, EB Rosenblum
Molecular Ecology 25 (22), 5663-5679, 2016
362016
Maternal transfer of antibodies to eggs in Xenopus laevis
TJ Poorten, RE Kuhn
Developmental & Comparative Immunology 33 (2), 171-175, 2009
302009
Domestication of temperate and coastal hybrids with distinct ancestral gene selection in octoploid strawberry
MA Hardigan, TJ Poorten, CB Acharya, GS Cole, KE Hummer, N Bassil, ...
The plant genome 11 (3), 180049, 2018
272018
Social network analysis of the genealogy of strawberry: retracing the wild roots of heirloom and modern cultivars
DDA Pincot, M Ledda, MJ Feldmann, MA Hardigan, TJ Poorten, ...
G3 11 (3), jkab015, 2021
252021
Colonization of novel White Sands habitat is associated with changes in lizard anti-predator behaviour
JM Robertson, K Hoversten, M Gruendler, TJ Poorten, DK Hews, ...
Biological Journal of the Linnean Society 103 (3), 657-667, 2011
212011
Targeted Mutagenesis of the Multicopy Myrosinase Gene Family in Allotetraploid Brassica juncea Reduces Pungency in Fresh Leaves across Environments
D Karlson, JP Mojica, TJ Poorten, SJ Lawit, S Jali, RD Chauhan, ...
Plants 11 (19), 2494, 2022
132022
Population genetic structure of the endangered Sierra Nevada yellow-legged frog (Rana sierrae) in Yosemite National Park based on multi-locus nuclear data from …
TJ Poorten, RA Knapp, EB Rosenblum
Conservation Genetics 18, 731-744, 2017
132017
Mountain Yellow-legged Frogs (Rana muscosa) did not Produce Detectable Antibodies in Immunization Experiments with Batrachochytrium dendrobatidis
TJ Poorten, MJ Stice-Kishiyama, CJ Briggs, EB Rosenblum
Journal of wildlife diseases 52 (1), 154-158, 2016
122016
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