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Helen Zhu
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Integrative pathway enrichment analysis of multivariate omics data
M Paczkowska, J Barenboim, N Sintupisut, NS Fox, H Zhu, D Abd-Rabbo, ...
Nature communications 11 (1), 735, 2020
1362020
Candidate cancer driver mutations in distal regulatory elements and long-range chromatin interaction networks
H Zhu, L Uusküla-Reimand, K Isaev, L Wadi, A Alizada, S Shuai, V Huang, ...
Molecular cell 77 (6), 1307-1321. e10, 2020
662020
The transcriptional landscape of Shh medulloblastoma
P Skowron, H Farooq, FMG Cavalli, AS Morrissy, M Ly, LD Hendrikse, ...
Nature communications 12 (1), 1749, 2021
612021
PCAWG Drivers and Functional Interpretation Working Group, Reimand J; PCAWG Consortium, Integrative pathway enrichment analysis of multivariate omics data
M Paczkowska, J Barenboim, N Sintupisut, NS Fox, H Zhu, D Abd-Rabbo, ...
Nat. Commun 11 (1), 735, 2020
272020
Single-cell mapper (scMappR): using scRNA-seq to infer the cell-type specificities of differentially expressed genes
DJ Sokolowski, M Faykoo-Martinez, L Erdman, H Hou, C Chan, H Zhu, ...
NAR Genomics and Bioinformatics 3 (1), lqab011, 2021
202021
An RNA foundation model enables discovery of disease mechanisms and candidate therapeutics
A Celaj, AJ Gao, TTY Lau, EM Holgersen, A Lo, V Lodaya, CB Cole, ...
bioRxiv, 2023.09. 20.558508, 2023
72023
Functional Interpretation Working, G. et al.(2020) Integrative pathway enrichment analysis of multivariate omics data
M Paczkowska, J Barenboim, N Sintupisut, NS Fox, H Zhu, D Abd-Rabbo, ...
Nat. Commun 11, 735, 0
7
A novel mouse model for liver metastasis of prostate cancer reveals dynamic tumour‐immune cell communication
K Liu, N Jing, D Wang, P Xu, J Wang, X Chen, C Cheng, Z Xin, Y He, ...
Cell Proliferation 54 (7), e13056, 2021
62021
Characterization of an RNA binding protein interactome reveals a context-specific post-transcriptional landscape of MYC-amplified medulloblastoma
MM Kameda-Smith, H Zhu, EC Luo, Y Suk, A Xella, B Yee, C Chokshi, ...
Nature Communications 13 (1), 7506, 2022
52022
PCAWG Drivers and Functional Interpretation Working Group, Reimand J et al (2020) Integrative pathway enrichment analysis of multivariate omics data
M Paczkowska, J Barenboim, N Sintupisut, NS Fox, H Zhu, D Abd-Rabbo, ...
Nat. Commun 11, 735, 0
5
The Cell‐Isolation Capsules with Rod‐Like Channels Ensure the Survival and Response of Cancer Cells to Their Microenvironment
L Hui, D Wang, Z Liu, Y Zhao, Z Ji, M Zhang, HH Zhu, W Luo, X Cheng, ...
Advanced Healthcare Materials 11 (2), 2101723, 2022
32022
Mutations in Noncoding Cis-Regulatory Elements Reveal Cancer Driver Cistromes in Luminal Breast Cancer
S El Ghamrasni, R Quevedo, J Hawley, P Mazrooei, Y Hanna, I Cirlan, ...
Molecular Cancer Research 20 (1), 102-113, 2022
32022
A polygenic two-hit hypothesis for prostate cancer
KE Houlahan, J Livingstone, NS Fox, N Kurganovs, H Zhu, ...
JNCI: Journal of the National Cancer Institute 115 (4), 468-472, 2023
22023
ADORA2A-driven proline synthesis triggers epigenetic reprogramming in neuroendocrine prostate and lung cancers
N Jing, K Zhang, X Chen, K Liu, J Wang, L Xiao, W Zhang, P Ma, P Xu, ...
Journal of Clinical Investigation 133 (24), e168670, 2023
12023
Autonomous assembly of epithelial structures by subrenal implantation of dissociated embryonic inner-ear cells
L Wang, K Zhang, HH Zhu, WQ Gao
NeuroReport 26 (8), 473-477, 2015
12015
moPepGen: Rapid and Comprehensive Proteoform Identification
C Zhu, LY Liu, TN Yamaguchi, H Zhu, R Hugh-White, J Livingstone, ...
bioRxiv, 2024.03. 28.587261, 2024
2024
An RNA foundation model enables discovery of disease mechanisms and candidate therapeutics
B Frey, A Celaj, A Gao, T Lau, E Holgersen, A Lo, V Lodaya, C Cole, ...
2023
Germline structural variants shape prostate cancer clinical and molecular evolution
NK Wang, A Rouette, KE Houlahan, TN Yamaguchi, J Livingstone, ...
Cancer Research 83 (7_Supplement), 4305-4305, 2023
2023
Author Correction: Characterization of an RNA binding protein interactome reveals a context-specific post-transcriptional landscape of MYC-amplified medulloblastoma (doi 10 …
MM Kameda-Smith, H Zhu, EC Luo, Y Suk, A Xella, B Yee, C Chokshi, ...
NATURE COMMUNICATIONS 14 (1), 2023
2023
Author Correction: Characterization of an RNA binding protein interactome reveals a context-specific post-transcriptional landscape of MYC-amplified medulloblastoma
MM Kameda-Smith, H Zhu, EC Luo, Y Suk, A Xella, B Yee, C Chokshi, ...
nature communications 14, 2023
2023
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