Ali Masoudi-Nejad, Professor

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Citations	5648	3603
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Ali NajafiAssociate professor of Bioinformatics and Systems BiologyVerified email at ut.ac.ir
Zaynab MousavianKarolinska InstituteVerified email at ki.se
Yosef Masoudi-SobhanzadehUniversity Health NetworkVerified email at utoronto.ca
Ali MoeiniUniversity of TehranVerified email at ut.ac.ir
Abbas Nowzari-Daliniassociate prof., university of tehranVerified email at ut.ac.ir
Falk SchreiberProfessor, University of Konstanz and Monash UniversityVerified email at uni-konstanz.de
Gholamreza BidkhoriResearcher at King's College LondonVerified email at kcl.ac.uk
Hossein LanjanianCellular and Molecular Endocrine Research Center, Research Institute for Endocrine Sciences, ShahidVerified email at ut.ac.ir
Habib MotieGhaderIslamic Azad University Tabriz BranchVerified email at ut.ac.ir
Yazdan AsgariCESP, Team "Exposome and Heredity"Verified email at inserm.fr
Karim AbbasiPostdoctoral Research Fellow at Sharif University of TechnologyVerified email at sharif.edu
Saman Hosseini Ashtiani, PhDUniversity of GothenburgVerified email at gu.se
Zahra NarimaniAssistant Professor, Institute for advanced studies in Basic Sciences (IASBS), Zanjan, IranVerified email at iasbs.ac.ir
Massoud AmanlouProfessor of Medicinal Chemistry, Tehran University of Medical SciencesVerified email at tums.ac.ir
Nazanin HosseinkhanInstitute of Endocrinology and Metabolism, Iran University of Medical Sciences(IUMS)Verified email at ut.ac.ir
Yadollah OmidiNova Southeastern University, Full Professor at College of Pharmacy, Florida, USAVerified email at nova.edu
Jahan B. Ghasemi (ORCID:0000-0002...University of TehranVerified email at ut.ac.ir
Shuhei NasudaLaboratory of Plant Breeding, Graduate School of Agriculture, Kyoto UniversityVerified email at kais.kyoto-u.ac.jp
Antti PosoProfessor of Drug Design, University of Eastern FinlandVerified email at uef.fi
Susumu GotoDatabase Center for Life Science, Research Organization of Information and SystemsVerified email at dbcls.rois.ac.jp

Ali Masoudi-Nejad, Professor

Laboratory of Systems Biology and Bioinformatics (LBB), University of Tehran

Verified email at ut.ac.ir - Homepage

Systems biology AI in medicine Digital pathology Microbiome in disease Multi-omics


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Kavosh: a new algorithm for finding network motifs ZRM Kashani, H Ahrabian, E Elahi, A Nowzari-Dalini, ES Ansari, S Asadi, ... BMC bioinformatics 10, 1-12, 2009	296	2009
Predictive genomics: a cancer hallmark network framework for predicting tumor clinical phenotypes using genome sequencing data E Wang, N Zaman, S Mcgee, JS Milanese, A Masoudi-Nejad, ... Seminars in cancer biology 30, 4-12, 2015	240	2015
EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments A Masoudi-Nejad, K Tonomura, S Kawashima, Y Moriya, M Suzuki, M Itoh, ... Nucleic acids research 34 (suppl_2), W459-W462, 2006	212	2006
Reconstruction of an integrated genome-scale co-expression network reveals key modules involved in lung adenocarcinoma G Bidkhori, Z Narimani, S Hosseini Ashtiani, A Moeini, A Nowzari-Dalini, ... PloS one 8 (7), e67552, 2013	193	2013
DeepCDA: deep cross-domain compound–protein affinity prediction through LSTM and convolutional neural networks K Abbasi, P Razzaghi, A Poso, M Amanlou, JB Ghasemi, ... Bioinformatics 36 (17), 4633-4642, 2020	188	2020
MODA: an efficient algorithm for network motif discovery in biological networks S Omidi, F Schreiber, A Masoudi-Nejad Genes & genetic systems 84 (5), 385-395, 2009	186	2009
PPIevo: Protein–protein interaction prediction from PSSM based evolutionary information J Zahiri, O Yaghoubi, M Mohammad-Noori, R Ebrahimpour, ... Genomics 102 (4), 237-242, 2013	163	2013
Computational prediction of protein–protein interaction networks: algorithms and resources J Zahiri, J Hannon Bozorgmehr, A Masoudi-Nejad Current genomics 14 (6), 397-414, 2013	161	2013
Transfer of rye chromosome segments to wheat by a gametocidal system A Masoudi-Nejad, S Nasuda, RA McIntosh, TR Endo, TR Endo Chromosome Research 10, 349-357, 2002	143	2002
A hybrid gene selection algorithm for microarray cancer classification using genetic algorithm and learning automata H Motieghader, A Najafi, B Sadeghi, A Masoudi-Nejad Informatics in Medicine Unlocked 9, 246-254, 2017	128	2017
FeatureSelect: a software for feature selection based on machine learning approaches Y Masoudi-Sobhanzadeh, H Motieghader, A Masoudi-Nejad BMC bioinformatics 20, 1-17, 2019	124	2019
Alterations in cancer cell metabolism: the Warburg effect and metabolic adaptation Y Asgari, Z Zabihinpour, A Salehzadeh-Yazdi, F Schreiber, ... Genomics 105 (5-6), 275-281, 2015	120	2015
Drug databases and their contributions to drug repurposing Y Masoudi-Sobhanzadeh, Y Omidi, M Amanlou, A Masoudi-Nejad Genomics 112 (2), 1087-1095, 2020	112	2020
Drug–target interaction prediction via chemogenomic space: learning-based methods Z Mousavian, A Masoudi-Nejad Expert opinion on drug metabolism & toxicology 10 (9), 1273-1287, 2014	111	2014
Building blocks of biological networks: a review on major network motif discovery algorithms A Masoudi-Nejad, F Schreiber, ZRM Kashani IET systems biology 6 (5), 164-174, 2012	98	2012
Drug–target interaction prediction from PSSM based evolutionary information Z Mousavian, S Khakabimamaghani, K Kavousi, A Masoudi-Nejad Journal of pharmacological and toxicological methods 78, 42-51, 2016	94	2016
Deep learning in drug target interaction prediction: current and future perspectives K Abbasi, P Razzaghi, A Poso, S Ghanbari-Ara, A Masoudi-Nejad Current Medicinal Chemistry 28 (11), 2100-2113, 2021	85	2021
Drug-target and disease networks: polypharmacology in the post-genomic era A Masoudi-Nejad, Z Mousavian, JH Bozorgmehr In silico pharmacology 1, 1-4, 2013	82	2013
Controllability in cancer metabolic networks according to drug targets as driver nodes Y Asgari, A Salehzadeh-Yazdi, F Schreiber, A Masoudi-Nejad PloS one 8 (11), e79397, 2013	75	2013
A multimodal deep learning-based drug repurposing approach for treatment of COVID-19 SA Hooshmand, M Zarei Ghobadi, SE Hooshmand, ... Molecular diversity 25, 1717-1730, 2021	72	2021

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