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Joseph Brown
Joseph Brown
Verified email at thermofisher.com
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Year
FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool
J Brown, M Pirrung, LA McCue
Bioinformatics 33 (19), 3137-3139, 2017
6512017
Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics
BJM Webb-Robertson, HK Wiberg, MM Matzke, JN Brown, J Wang, ...
Journal of proteome research 14 (5), 1993-2001, 2015
2712015
Modulation of antibody galactosylation through feeding of uridine, manganese chloride, and galactose
MJ Gramer, JJ Eckblad, R Donahue, J Brown, C Shultz, K Vickerman, ...
Biotechnology and bioengineering 108 (7), 1591-1602, 2011
2472011
DanteR: an extensible R-based tool for quantitative analysis of-omics data
T Taverner, YV Karpievitch, AD Polpitiya, JN Brown, AR Dabney, ...
Bioinformatics 28 (18), 2404-2406, 2012
1402012
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data
S Kieser, J Brown, EM Zdobnov, M Trajkovski, LA McCue
BMC bioinformatics 21, 1-8, 2020
1162020
Human leukocyte antigen association in idiopathic thrombotic thrombocytopenic purpura: evidence for an immunogenetic link
M Scully, J Brown, R Patel, V McDonald, CJ Brown, S Machin
Journal of Thrombosis and Haemostasis 8 (2), 257-262, 2010
1162010
HIV-1 activates macrophages independent of Toll-like receptors
JN Brown, JJ Kohler, CR Coberley, JW Sleasman, MM Goodenow
PloS one 3 (12), e3664, 2008
1162008
A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label‐free LC‐MS proteomics experiments
MM Matzke, JN Brown, MA Gritsenko, TO Metz, JG Pounds, KD Rodland, ...
Proteomics, 2012
1022012
SARS-CoV-2 B. 1.617 emergence and sensitivity to vaccine-elicited antibodies
I Ferreira, R Datir, G Papa, S Kemp, B Meng, P Rakshit, S Singh, ...
BioRxiv, 2021
962021
A Multi-Omic View of Host-Pathogen-Commensal Interplay in Salmonella-Mediated Intestinal Infection
BL Deatherage Kaiser, J Li, JA Sanford, YM Kim, SR Kronewitter, ...
PloS one 8 (6), e67155, 2013
922013
Suite of activity-based probes for cellulose-degrading enzymes
LM Chauvigné-Hines, LN Anderson, HM Weaver, JN Brown, PK Koech, ...
Journal of the American Chemical Society 134 (50), 20521-20532, 2012
892012
Indian SARS-CoV-2 Genomics Consortium (INSACOG); Genotype to Phenotype Japan (G2P-Japan) Consortium; CITIID-NIHR BioResource COVID-19 Collaboration. SARS-CoV-2 B. 1.617. 2 …
P Mlcochova, SA Kemp, MS Dhar, G Papa, B Meng, I Ferreira, R Datir, ...
Nature 599 (7883), 114-9, 2021
862021
A simple method for rapid isolation of microsatellites from yeast artificial chromosomes
J Brown, LJ Hardwick, AF Wright
Molecular and Cellular Probes 9 (1), 53-57, 1995
661995
Samplot: a platform for structural variant visual validation and automated filtering
JR Belyeu, M Chowdhury, J Brown, BS Pedersen, MJ Cormier, ...
Genome biology 22 (1), 161, 2021
622021
De novo structural mutation rates and gamete-of-origin biases revealed through genome sequencing of 2,396 families
JR Belyeu, H Brand, H Wang, X Zhao, BS Pedersen, J Feusier, M Gupta, ...
The American Journal of Human Genetics 108 (4), 597-607, 2021
612021
Morphine produces immunosuppressive effects in nonhuman primates at the proteomic and cellular levels
JN Brown, GM Ortiz, TE Angel, JM Jacobs, M Gritsenko, EY Chan, ...
Molecular & Cellular Proteomics 11 (9), 605-618, 2012
612012
Quantitative analysis of human salivary gland‐derived intact proteome using top‐down mass spectrometry
S Wu, JN Brown, N Tolić, D Meng, X Liu, H Zhang, R Zhao, RJ Moore, ...
Proteomics 14 (10), 1211-1222, 2014
592014
Purification and properties of a pantetheine-hydrolyzing enzyme from pig kidney.
CT Wittwer, D Burkhard, K Ririe, R Rasmussen, J Brown, BW Wyse, ...
Journal of biological chemistry 258 (16), 9733-9738, 1983
561983
Approach to cerebrospinal fluid (CSF) biomarker discovery and evaluation in HIV infection
RW Price, J Peterson, D Fuchs, TE Angel, H Zetterberg, L Hagberg, ...
Journal of neuroimmune pharmacology 8, 1147-1158, 2013
522013
Extensive HIV-1 intra-host recombination is common in tissues with abnormal histopathology
SL Lamers, M Salemi, DC Galligan, T de Oliveira, GB Fogel, SC Granier, ...
PloS one 4 (3), e5065, 2009
522009
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