Xuefeng Cui
Xuefeng Cui
Assistant Professor at Tsinghua University
Verified email at mail.tsinghua.edu.cn - Homepage
TitleCited byYear
MRE: a web tool to suggest foreign enzymes for the biosynthesis pathway design with competing endogenous reactions in mind
H Kuwahara, M Alazmi, X Cui, X Gao
Nucleic acids research 44 (W1), W217-W225, 2016
202016
Homology search for genes
X Cui, T Vinař, B Brejová, D Shasha, M Li
Bioinformatics 23 (13), i97-i103, 2007
192007
CMsearch: simultaneous exploration of protein sequence space and structure space improves not only protein homology detection but also protein structure prediction
X Cui, Z Lu, S Wang, J Jing-Yan Wang, X Gao
Bioinformatics 32 (12), i332-i340, 2016
152016
A Flexible Domain-Domain Hinge Promotes an Induced-fit Dominant Mechanism for the Loading of Guide-DNA into Argonaute Protein in Thermus thermophilus
L Zhu, H Jiang, FK Sheong, X Cui, X Gao, Y Wang, X Huang
The Journal of Physical Chemistry B 120 (10), 2709-2720, 2016
152016
Finding optimal interaction interface alignments between biological complexes
X Cui, H Naveed, X Gao
Bioinformatics 31 (12), i133-i141, 2015
102015
Understanding the core of RNA interference: The dynamic aspects of Argonaute-mediated processes
L Zhu, H Jiang, FK Sheong, X Cui, Y Wang, X Gao, X Huang
Progress in biophysics and molecular biology 128, 39-46, 2017
72017
Fingerprinting protein structures effectively and efficiently
X Cui, SC Li, L He, M Li
Bioinformatics 30 (7), 949-955, 2014
72014
Towards reliable automatic protein structure alignment
X Cui, SC Li, D Bu, M Li
Proceedings of the 13th International Workshop on Algorithms in …, 2013
52013
K-nearest uphill clustering in the protein structure space
X Cui, X Gao
Neurocomputing 220, 52-59, 2017
42017
Protein Structure Idealization: How accurately is it possible to model protein structures with dihedral angles?
X Cui, SC Li, D Bu, B Alipanahi, M Li
Algorithms for Molecular Biology 8 (1), 5, 2013
42013
SBOLme: a repository of SBOL parts for metabolic engineering
H Kuwahara, X Cui, R Umarov, R Grünberg, CJ Myers, X Gao
ACS synthetic biology 6 (4), 732-736, 2017
32017
Compare local pocket and global protein structure models by small structure patterns
X Cui, H Kuwahara, SC Li, X Gao
Proceedings of the 6th ACM Conference on Bioinformatics, Computational …, 2015
32015
Homologous protein detection
X Cui, Y Min
Academic Press, 2019
12019
Multi-instance dictionary learning via multivariate performance measure optimization
JJY Wang, IWH Tsang, X Cui, Z Lu, X Gao
Pattern Recognition 66, 448-459, 2017
12017
How accurately can we model protein structures with dihedral angles?
X Cui, SC Li, D Bu, BA Ramandi, M Li
Proceedings of the 12th International Workshop on Algorithms in …, 2012
12012
When sparse coding meets ranking: a joint framework for learning sparse codes and ranking scores
JJY Wang, X Cui, G Yu, L Guo, X Gao
Neural Computing and Applications 31 (3), 701-710, 2019
2019
Method for Determining Heterologous Biosynthesis Pathways
X Gao, H Kuwahara, MS Alazmi, X Cui
US Patent App. 16/067,687, 2019
2019
Mmalloc: A Dynamic Memory Management on Many-core Coprocessor for the Acceleration of Storage-intensive Bioinformatics Application
Z Wang, M Zhang, J Zhang, R Yan, X Wan, Z Liu, F Zhang, X Cui
2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2018
2018
Learning Protein Structural Fingerprints under the Label-Free Supervision of Domain Knowledge
Y Min, S Liu, C Lou, X Cui
2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2018
2018
Method for determining heterologous biosynthesis pathways
X Gao, H Kuwahara, MS Alazmi, X Cui
2017
The system can't perform the operation now. Try again later.
Articles 1–20