| MRE: a web tool to suggest foreign enzymes for the biosynthesis pathway design with competing endogenous reactions in mind H Kuwahara, M Alazmi, X Cui, X Gao Nucleic acids research 44 (W1), W217-W225, 2016 | 31 | 2016 |
| CMsearch: simultaneous exploration of protein sequence space and structure space improves not only protein homology detection but also protein structure prediction X Cui, Z Lu, S Wang, J Jing-Yan Wang, X Gao Bioinformatics 32 (12), i332-i340, 2016 | 25 | 2016 |
| Homology search for genes X Cui, T Vinař, B Brejová, D Shasha, M Li Bioinformatics 23 (13), i97-i103, 2007 | 21 | 2007 |
| A Flexible Domain-Domain Hinge Promotes an Induced-fit Dominant Mechanism for the Loading of Guide-DNA into Argonaute Protein in Thermus thermophilus L Zhu, H Jiang, FK Sheong, X Cui, X Gao, Y Wang, X Huang The Journal of Physical Chemistry B 120 (10), 2709-2720, 2016 | 16 | 2016 |
| Finding optimal interaction interface alignments between biological complexes X Cui, H Naveed, X Gao Bioinformatics 31 (12), i133-i141, 2015 | 11 | 2015 |
| Fingerprinting protein structures effectively and efficiently X Cui, SC Li, L He, M Li Bioinformatics 30 (7), 949-955, 2014 | 9 | 2014 |
| Understanding the core of RNA interference: The dynamic aspects of Argonaute-mediated processes L Zhu, H Jiang, FK Sheong, X Cui, Y Wang, X Gao, X Huang Progress in biophysics and molecular biology 128, 39-46, 2017 | 8 | 2017 |
| K-nearest uphill clustering in the protein structure space X Cui, X Gao Neurocomputing 220, 52-59, 2017 | 5 | 2017 |
| Towards reliable automatic protein structure alignment X Cui, SC Li, D Bu, M Li Proceedings of the 13th International Workshop on Algorithms in …, 2013 | 5 | 2013 |
| SBOLme: a repository of SBOL parts for metabolic engineering H Kuwahara, X Cui, R Umarov, R Grunberg, CJ Myers, X Gao ACS synthetic biology 6 (4), 732-736, 2017 | 4 | 2017 |
| Protein Structure Idealization: How accurately is it possible to model protein structures with dihedral angles? X Cui, SC Li, D Bu, B Alipanahi, M Li Algorithms for Molecular Biology 8 (1), 1-13, 2013 | 4 | 2013 |
| Compare local pocket and global protein structure models by small structure patterns X Cui, H Kuwahara, SC Li, X Gao Proceedings of the 6th ACM Conference on Bioinformatics, Computational …, 2015 | 3 | 2015 |
| SHREC 2020: Classification in cryo-electron tomograms I Gubins, ML Chaillet, G van der Schot, RC Veltkamp, F Förster, Y Hao, ... Computers & Graphics 91, 279-289, 2020 | 2 | 2020 |
| Learning Protein Structural Fingerprints under the Label-Free Supervision of Domain Knowledge Y Min, S Liu, C Lou, X Cui 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2018 | 2 | 2018 |
| When sparse coding meets ranking: a joint framework for learning sparse codes and ranking scores JJY Wang, X Cui, G Yu, L Guo, X Gao Neural Computing and Applications 31 (3), 701-710, 2019 | 1 | 2019 |
| Homologous protein detection X Cui, Y Min Academic Press, 2019 | 1 | 2019 |
| Multi-instance dictionary learning via multivariate performance measure optimization JJY Wang, IWH Tsang, X Cui, Z Lu, X Gao Pattern Recognition 66, 448-459, 2017 | 1 | 2017 |
| How accurately can we model protein structures with dihedral angles? X Cui, SC Li, D Bu, BA Ramandi, M Li Proceedings of the 12th International Workshop on Algorithms in …, 2012 | 1 | 2012 |
| Attention is all you need for general-purpose protein structure embedding X Cui bioRxiv, 2021 | | 2021 |
| SVLR: Genome Structure Variant Detection Using Long Read Sequencing Data W Gu, A Zhou, L Wang, S Sun, X Cui, D Zhu International Symposium on Bioinformatics Research and Applications, 140-153, 2020 | | 2020 |
Xin GaoAssociate Professor, Computer Electrical and Mathematical Sciences and Engineering Division, KAUSTVerified email at kaust.edu.sa
