Cliff Meyer
Cliff Meyer
Dana-Farber Cancer Institute and Harvard T.H. Chan School of Public Health
Verified email at jimmy.harvard.edu
TitleCited byYear
Model-based analysis of ChIP-Seq (MACS)
Y Zhang, T Liu, CA Meyer, J Eeckhoute, DS Johnson, BE Bernstein, ...
Genome biology 9 (9), R137, 2008
64302008
Genome-wide analysis of estrogen receptor binding sites
JS Carroll, CA Meyer, J Song, W Li, TR Geistlinger, J Eeckhoute, ...
Nature genetics 38 (11), 1289, 2006
13602006
Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1
JS Carroll, XS Liu, AS Brodsky, W Li, CA Meyer, AJ Szary, J Eeckhoute, ...
Cell 122 (1), 33-43, 2005
12632005
FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription
M Lupien, J Eeckhoute, CA Meyer, Q Wang, Y Zhang, W Li, JS Carroll, ...
Cell 132 (6), 958-970, 2008
8232008
Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer
Q Wang, W Li, Y Zhang, X Yuan, K Xu, J Yu, Z Chen, R Beroukhim, ...
Cell 138 (2), 245-256, 2009
7712009
Handbook of test problems in local and global optimization
CA Floudas, PM Pardalos, C Adjiman, WR Esposito, ZH Gümüs, ...
Springer Science & Business Media, 2013
7352013
Model-based analysis of tiling-arrays for ChIP-chip
WE Johnson, W Li, CA Meyer, R Gottardo, JS Carroll, M Brown, XS Liu
Proceedings of the National Academy of Sciences 103 (33), 12457-12462, 2006
4722006
Cistrome: an integrative platform for transcriptional regulation studies
T Liu, JA Ortiz, L Taing, CA Meyer, B Lee, Y Zhang, H Shin, SS Wong, ...
Genome biology 12 (8), R83, 2011
4372011
Nucleosome dynamics define transcriptional enhancers
HH He, CA Meyer, H Shin, ST Bailey, G Wei, Q Wang, Y Zhang, K Xu, ...
Nature genetics 42 (4), 343, 2010
4232010
Response and resistance to BET bromodomain inhibitors in triple-negative breast cancer
S Shu, CY Lin, HH He, RM Witwicki, DP Tabassum, JM Roberts, ...
Nature 529 (7586), 413, 2016
2402016
Global optimization in the 21st century: Advances and challenges
CA Floudas, IG Akrotirianakis, S Caratzoulas, CA Meyer, J Kallrath
Computers & Chemical Engineering 29 (6), 1185-1202, 2005
2372005
Sequence determinants of improved CRISPR sgRNA design
H Xu, T Xiao, CH Chen, W Li, CA Meyer, Q Wu, D Wu, L Cong, F Zhang, ...
Genome research 25 (8), 1147-1157, 2015
2342015
Transcriptional role of cyclin D1 in development revealed by a genetic–proteomic screen
F Bienvenu, S Jirawatnotai, JE Elias, CA Meyer, K Mizeracka, A Marson, ...
Nature 463 (7279), 374, 2010
2292010
GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data
J Feng, CA Meyer, Q Wang, JS Liu, X Shirley Liu, Y Zhang
Bioinformatics 28 (21), 2782-2788, 2012
2212012
Identifying and mitigating bias in next-generation sequencing methods for chromatin biology
CA Meyer, XS Liu
Nature Reviews Genetics 15 (11), 709, 2014
1932014
Differentiation-specific histone modifications reveal dynamic chromatin interactions and partners for the intestinal transcription factor CDX2
MP Verzi, H Shin, HH He, R Sulahian, CA Meyer, RK Montgomery, ...
Developmental cell 19 (5), 713-726, 2010
1612010
Target analysis by integration of transcriptome and ChIP-seq data with BETA
S Wang, H Sun, J Ma, C Zang, C Wang, J Wang, Q Tang, CA Meyer, ...
Nature protocols 8 (12), 2502, 2013
1552013
Global optimization of a combinatorially complex generalized pooling problem
CA Meyer, CA Floudas
AIChE journal 52 (3), 1027-1037, 2006
1532006
A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences
W Li, CA Meyer, XS Liu
Bioinformatics 21 (suppl_1), i274-i282, 2005
1502005
MYC regulation of a “poor-prognosis” metastatic cancer cell state
A Wolfer, BS Wittner, D Irimia, RJ Flavin, M Lupien, RN Gunawardane, ...
Proceedings of the National Academy of Sciences 107 (8), 3698-3703, 2010
1462010
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Articles 1–20