Jeremy G Bird

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Bryce E NickelsProfessor of Genetics, Rutgers UniversityVerified email at waksman.rutgers.edu
Richard H. EbrightBoard of Governors Professor of Chemistry and Chemical Biology, Rutgers UniversityVerified email at waksman.rutgers.edu
Yu ZhangCAS Center for Excellence in Molecular Plant ScienceVerified email at sippe.ac.cn
Megerditch KiledjianRutgers UniversityVerified email at biology.rutgers.edu
Libor KrasnyInstitute of Microbiology, Czech Academy of Sciences, Prague, Czech RepublicVerified email at biomed.cas.cz
Hanif Vahedian-MovahedPostdoctoral Fellow, Harvard UniversityVerified email at hms.harvard.edu
Deanne M. Taylor PhDResearch Associate Professor, UPenn PSOMVerified email at upenn.edu
Yuanchao ZhangChildren's Hospital of PhiladelphiaVerified email at chop.edu
Ronald P. HartProfessor of Cell Biology and Neuroscience, Rutgers UniversityVerified email at rutgers.edu
Selom K. DoamekporColumbia UniversityVerified email at columbia.edu
Craig D. KaplanAssociate Professor, Department of Biological Sciences, University of PittsburghVerified email at pitt.edu
Brian BuckleyRutgers UniversityVerified email at eohsi.rutgers.edu
Aparna Ramachandran, PhDRutgers - The State University of New JerseyVerified email at rwjms.rutgers.edu
Smita S PatelRutgers UniversityVerified email at rwjms.rutgers.edu
Urmimala BasuPost-doctoral Research FellowVerified email at hms.harvard.edu
David KusterMax Planck Institute of Molecular Cell Biology and GeneticsVerified email at mpi-cbg.de
Dmitry TemiakovProfessor, Thomas Jefferson UniversityVerified email at jefferson.edu
Atif Towheed, DO, PhDUPMC Pittsburgh, (Previous: The Children's Hospital of Philadelphia, TouroCOM,NY)Verified email at upmc.edu
Richard L. GourseUniversity of WisconsinVerified email at bact.wisc.edu
Jared WinkelmanFounding Partner, TrestleVerified email at trestlebiosciences.com

Jeremy G Bird

Assistant Professor of Biological Sciences, University of Delaware

Verified email at udel.edu

Transcription RNA biology


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5′ end nicotinamide adenine dinucleotide cap in human cells promotes RNA decay through DXO-mediated deNADding X Jiao, SK Doamekpor, JG Bird, BE Nickels, L Tong, RP Hart, M Kiledjian Cell 168 (6), 1015-1027. e10, 2017	216	2017
The mechanism of RNA 5′ capping with NAD⁺, NADH and desphospho-CoA JG Bird, Y Zhang, Y Tian, N Panova, I Barvík, L Greene, M Liu, B Buckley, ... Nature 535 (7612), 444-447, 2016	201	2016
Interactions between RNA polymerase and the “core recognition element” counteract pausing IO Vvedenskaya, H Vahedian-Movahed, JG Bird, JG Knoblauch, ... Science 344 (6189), 1285-1289, 2014	181	2014
CapZyme-Seq Comprehensively Defines Promoter-Sequence Determinants for RNA 5′ Capping with NAD+ IO Vvedenskaya, JG Bird, Y Zhang, Y Zhang, X Jiao, I Barvík, L Krásný, ... Molecular cell 70 (3), 553-564. e9, 2018	73	2018
Highly efficient 5'capping of mitochondrial RNA with NAD+ and NADH by yeast and human mitochondrial RNA polymerase JG Bird, U Basu, D Kuster, A Ramachandran, E Grudzien-Nogalska, ... Elife 7, e42179, 2018	72	2018
Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection JT Winkelman, IO Vvedenskaya, Y Zhang, Y Zhang, JG Bird, DM Taylor, ... Science 351 (6277), 1090-1093, 2016	66	2016
Plasmid P1 RepA is homologous to the F plasmid RepE class of initiators S Sharma, BK Sathyanarayana, JG Bird, JR Hoskins, B Lee, S Wickner Journal of Biological Chemistry 279 (7), 6027-6034, 2004	41	2004
“NAD-capQ” detection and quantitation of NAD caps E Grudzien-Nogalska, JG Bird, BE Nickels, M Kiledjian RNA 24 (10), 1418-1425, 2018	37	2018
Functional analysis of CbpA, a DnaJ homolog and nucleoid-associated DNA-binding protein JG Bird, S Sharma, SC Roshwalb, JR Hoskins, S Wickner Journal of Biological Chemistry 281 (45), 34349-34356, 2006	36	2006
A universal transcription pause sequence is an element of initiation factor σ70-dependent pausing JG Bird, EJ Strobel, JW Roberts Nucleic acids research 44 (14), 6732-6740, 2016	10	2016
RNA capping by transcription initiation with Non-canonical Initiating Nucleotides (NCINs): Determination of relative efficiencies of transcription initiation with NCINs and NTPs JG Bird, BE Nickels, RH Ebright Bio-protocol 7 (12), e2336-e2336, 2017	6	2017
The lysis cassette of DLP12 defective prophage is regulated by RpoE KG Rueggeberg, FA Toba, JG Bird, N Franck, MG Thompson, AG Hay Microbiology 161 (8), 1683-1693, 2015	6	2015
Structural basis of transcription antitermination by Qλ: NusA induces refolding of Qλ to form nozzle for RNA polymerase exit channel Z Yin, JG Bird, JT Kaelber, BE Nickels, RH Ebright bioRxiv, 2022	3	2022
In transcription antitermination by Qλ, NusA induces refolding of Qλ to form a nozzle that extends the RNA polymerase RNA-exit channel Z Yin, JG Bird, JT Kaelber, BE Nickels, RH Ebright Proceedings of the National Academy of Sciences 119 (33), e2205278119, 2022	2	2022
Characterization of novel DNA elements necessary for sigma-dependent promoter proximal transcriptional pausing J Bird	2	2013
A gel electrophoresis-based assay for measuring enzymatic RNA decapping activity Y Singh, JG Bird Academic Press, 2022	1	2022
Mitochondrial RNA capping: highly efficient 5'-RNA capping with NAD+ and NADH by yeast and human mitochondrial RNA polymerase JG Bird, U Basu, D Kuster, A Ramachandran, E Grudzien-Nogalska, ... bioRxiv, 381160, 2018	1	2018
The Mechanism of Transcription Stalling under Torsion C Tan, J Ma, JG Bird, JT Inman, JW Roberts, MD Wang Biophysical Journal 108 (2), 536a, 2015	1	2015
Sequence-Specific RNAP-DNA Interactions in Transcription Initiation and Elongation: Core Recognition Element (CRE) H Vahedian-Movahed, Y Zhang, J Bird, I Vvedenskaya, J Knobloch, ... Biophysical Journal 108 (2), 535a, 2015		2015

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