Jeremy Bird
Jeremy Bird
Assistant Professor of Biological Sciences, University of Delaware
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Interactions between RNA polymerase and the “core recognition element” counteract pausing
IO Vvedenskaya, H Vahedian-Movahed, JG Bird, JG Knoblauch, ...
Science 344 (6189), 1285-1289, 2014
The mechanism of RNA 5′ capping with NAD+, NADH and desphospho-CoA
JG Bird, Y Zhang, Y Tian, N Panova, I Barvík, L Greene, M Liu, B Buckley, ...
Nature 535 (7612), 444-447, 2016
5′ end nicotinamide adenine dinucleotide cap in human cells promotes RNA decay through DXO-mediated deNADding
X Jiao, SK Doamekpor, JG Bird, BE Nickels, L Tong, RP Hart, M Kiledjian
Cell 168 (6), 1015-1027. e10, 2017
Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection
JT Winkelman, IO Vvedenskaya, Y Zhang, Y Zhang, JG Bird, DM Taylor, ...
Science 351 (6277), 1090-1093, 2016
CapZyme-Seq Comprehensively Defines Promoter-Sequence Determinants for RNA 5′ Capping with NAD+
IO Vvedenskaya, JG Bird, Y Zhang, Y Zhang, X Jiao, I Barvík, L Krásný, ...
Molecular cell 70 (3), 553-564. e9, 2018
Plasmid P1 RepA is homologous to the F plasmid RepE class of initiators
S Sharma, BK Sathyanarayana, JG Bird, JR Hoskins, B Lee, S Wickner
Journal of Biological Chemistry 279 (7), 6027-6034, 2004
Highly efficient 5'capping of mitochondrial RNA with NAD+ and NADH by yeast and human mitochondrial RNA polymerase
JG Bird, U Basu, D Kuster, A Ramachandran, E Grudzien-Nogalska, ...
Elife 7, e42179, 2018
Functional analysis of CbpA, a DnaJ homolog and nucleoid-associated DNA-binding protein
JG Bird, S Sharma, SC Roshwalb, JR Hoskins, S Wickner
Journal of Biological Chemistry 281 (45), 34349-34356, 2006
“NAD-capQ” detection and quantitation of NAD caps
E Grudzien-Nogalska, JG Bird, BE Nickels, M Kiledjian
RNA 24 (10), 1418-1425, 2018
A universal transcription pause sequence is an element of initiation factor σ70-dependent pausing
JG Bird, EJ Strobel, JW Roberts
Nucleic acids research 44 (14), 6732-6740, 2016
RNA Capping by Transcription Initiation with Non-canonical Initiating Nucleotides (NCINs): Determination of Relative Efficiencies of Transcription Initiation with NCINs and NTPs
JG Bird, BE Nickels, RH Ebright
Bio-protocol 7 (12), 2017
The lysis cassette of DLP12 defective prophage is regulated by RpoE
KG Rueggeberg, FA Toba, JG Bird, N Franck, MG Thompson, AG Hay
Microbiology 161 (8), 1683-1693, 2015
Characterization of novel DNA elements necessary for sigma-dependent promoter proximal transcriptional pausing
J Bird
Mitochondrial RNA capping: highly efficient 5'-RNA capping with NAD+ and NADH by yeast and human mitochondrial RNA polymerase
JG Bird, U Basu, D Kuster, A Ramachandran, E Grudzien-Nogalska, ...
bioRxiv, 381160, 2018
The Mechanism of Transcription Stalling under Torsion
C Tan, J Ma, JG Bird, JT Inman, JW Roberts, MD Wang
Biophysical Journal 108 (2), 536a, 2015
Sequence-Specific RNAP-DNA Interactions in Transcription Initiation and Elongation: Core Recognition Element (CRE)
H Vahedian-Movahed, Y Zhang, J Bird, I Vvedenskaya, J Knobloch, ...
Biophysical Journal 108 (2), 535a, 2015
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