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Yong Wang
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A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ...
Nature biotechnology 32 (12), 1202, 2014
6232014
Inferring gene regulatory networks from multiple microarray datasets
Y Wang, T Joshi, XS Zhang, D Xu, L Chen
Bioinformatics 22 (19), 2413-2420, 2006
3552006
Reverse Engineering
Y Wang
Encyclopedia of Systems Biology, 1855-1856, 2013
171*2013
Network-based drug repositioning
Z Wu, Y Wang, L Chen
Molecular BioSystems 9 (6), 1268-1281, 2013
1592013
Prediction of protein–RNA binding sites by a random forest method with combined features
ZP Liu, LY Wu, Y Wang, XS Zhang, L Chen
Bioinformatics 26 (13), 1616-1622, 2010
1582010
Alignment of molecular networks by integer quadratic programming
Z Li, S Zhang, Y Wang, XS Zhang, L Chen
Bioinformatics 23 (13), 1631-1639, 2007
1382007
Drug repositioning by kernel-based integration of molecular structure, molecular activity, and phenotype data
Y Wang, S Chen, N Deng, Y Wang
PLoS One 8 (11), e78518, 2013
1282013
Modeling gene regulation from paired expression and chromatin accessibility data
Z Duren, X Chen, R Jiang, Y Wang, WH Wong
Proceedings of the National Academy of Sciences 114 (25), E4914-E4923, 2017
1202017
NOA: a novel Network Ontology Analysis method
J Wang, Q Huang, ZP Liu, Y Wang, LY Wu, L Chen, XS Zhang
Nucleic acids research 39 (13), e87-e87, 2011
1112011
Gene function prediction using labeled and unlabeled data
XM Zhao, Y Wang, L Chen, K Aihara
BMC bioinformatics 9 (1), 1-14, 2008
1102008
Overlapping community detection in complex networks using symmetric binary matrix factorization
ZY Zhang, Y Wang, YY Ahn
Physical Review E 87 (6), 062803, 2013
1082013
De novo prediction of RNA–protein interactions from sequence information
Y Wang, X Chen, ZP Liu, Q Huang, Y Wang, D Xu, XS Zhang, R Chen, ...
Molecular BioSystems 9, 133-142, 2013
1052013
Modularity optimization in community detection of complex networks
XS Zhang, RS Wang, Y Wang, J Wang, Y Qiu, L Wang, L Chen
EPL (Europhysics Letters) 87 (3), 38002, 2009
1042009
Disease-aging network reveals significant roles of aging genes in connecting genetic diseases
J Wang, S Zhang, Y Wang, L Chen, XS Zhang
PLoS computational biology 5 (9), e1000521, 2009
982009
Integrative analysis of single cell genomics data by coupled nonnegative matrix factorizations
Z Duren, X Chen, M Zamanighomi, W Zeng, A Satpathy, H Chang, ...
Proc Natl Acad Sci U S A 115 (30), 7723-7728, 2018
972018
Network-based analysis of complex diseases
ZP Liu, Y Wang, XS Zhang, L Chen
IET Systems Biology 6 (1), 22-33, 2012
952012
Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains
ZP Liu, Y Wang, XS Zhang, L Chen
BMC systems biology 4 (2), 1-12, 2010
922010
Predicting DNA-and RNA-binding proteins from sequences with kernel methods
X Shao, Y Tian, L Wu, Y Wang, L Jing, N Deng
Journal of theoretical biology 258 (2), 289-293, 2009
822009
A new trust region method for nonlinear equations
J Zhang, Y Wang
Mathematical Methods of Operations Research 58 (2), 283-298, 2003
802003
Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures
RS Wang, S Zhang, Y Wang, XS Zhang, L Chen
Neurocomputing 72 (1-3), 134-141, 2008
712008
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