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Jeff Wintersinger
Jeff Wintersinger
PhD student in Computer Science, University of Toronto
Verified email at mail.utoronto.ca - Homepage
Title
Cited by
Cited by
Year
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
1805*2020
The evolutionary history of 2,658 cancers
M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ...
Nature 578 (7793), 122-128, 2020
9052020
Colorectal cancer cells enter a diapause-like DTP state to survive chemotherapy
SK Rehman, J Haynes, E Collignon, KR Brown, Y Wang, AML Nixon, ...
Cell 184 (1), 226-242. e21, 2021
3162021
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
Cell 184 (8), 2239-2254. e39, 2021
3102021
The evolutionary landscape of localized prostate cancers drives clinical aggression
SMG Espiritu, LY Liu, Y Rubanova, V Bhandari, EM Holgersen, LM Szyca, ...
Cell 173 (4), 1003-1013. e15, 2018
2352018
A practical guide to cancer subclonal reconstruction from DNA sequencing
M Tarabichi, A Salcedo, AG Deshwar, M Ni Leathlobhair, J Wintersinger, ...
Nature methods 18 (2), 144-155, 2021
1352021
Relapse-fated latent diagnosis subclones in acute B lineage leukemia are drug tolerant and possess distinct metabolic programs
SM Dobson, L García-Prat, RJ Vanner, J Wintersinger, E Waanders, Z Gu, ...
Cancer discovery 10 (4), 568-587, 2020
942020
A community effort to create standards for evaluating tumor subclonal reconstruction
A Salcedo, M Tarabichi, SMG Espiritu, AG Deshwar, M David, NM Wilson, ...
Nature biotechnology 38 (1), 97-107, 2020
72*2020
Kablammo: an interactive, web-based BLAST results visualizer
JA Wintersinger, JD Wasmuth
Bioinformatics 31 (8), 1305-1306, 2015
722015
Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig
Y Rubanova, R Shi, CF Harrigan, R Li, J Wintersinger, N Sahin, ...
Nature communications 11 (1), 731, 2020
54*2020
Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
BioRxiv, 312041, 2018
52*2018
PCAWG Evolution and Heterogeneity Working Group and the PCAWG Consortium. Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
Cell 184 (8), 2239-54, 2021
262021
Reconstructing complex cancer evolutionary histories from multiple bulk DNA samples using Pairtree
JA Wintersinger, SM Dobson, E Kulman, LD Stein, JE Dick, Q Morris
Blood Cancer Discovery 3 (3), 208-219, 2022
152022
Reconstructing tumor evolutionary histories and clone trees in polynomial-time with SubMARine
LK Sundermann, J Wintersinger, G Rätsch, J Stoye, Q Morris
PLoS computational biology 17 (1), e1008400, 2021
152021
Relapse-fated latent diagnosis subclones in acute B lineage leukemia are drug tolerant and possess distinct metabolic programs. Cancer Discov. 2020; 10: 568–587. doi: 10.1158 …
SM Dobson, L García-Prat, RJ Vanner, J Wintersinger, E Waanders, Z Gu, ...
CD-19-1059.[Europe PMC free article][Abstract][CrossRef][Google Scholar], 0
14
Multiomic profiling of central nervous system leukemia identifies mRNA translation as a therapeutic target
RJ Vanner, SM Dobson, OI Gan, J McLeod, EM Schoof, I Grandal, ...
Blood cancer discovery 3 (1), 16-31, 2022
42022
Reconstructing cancer phylogenies using Pairtree, a clone tree reconstruction algorithm
E Kulman, J Wintersinger, Q Morris
STAR protocols 3 (4), 101706, 2022
32022
Pairtree: fast reconstruction of cancer evolutionary history using pairwise mutation relationships
J Wintersinger, S Dobson, J Dick, Q Morris
bioRxiv, 372219, 2020
32020
One species, two genomes: A critical assessment of inter-isolate variation and identification of assembly incongruence in Haemonchus contortus
JA Wintersinger, GM Mariene, JD Wasmuth
bioRxiv, 384008, 2018
32018
Abstract B2-59: PhyloSpan: Using multi-mutation reads to resolve subclonal architectures from heterogeneous tumor samples
AG Deshwar, L Boyles, J Wintersinger, PC Boutros, YW Teh, Q Morris, ...
Cancer Research 75 (22_Supplement_2), B2-59-B2-59, 2015
22015
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Articles 1–20