Jeff Wintersinger
Jeff Wintersinger
PhD student in Computer Science, University of Toronto
Verified email at - Homepage
Cited by
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
Cell 184 (8), 2239-2254. e39, 2021
A practical guide to cancer subclonal reconstruction from DNA sequencing
M Tarabichi, A Salcedo, AG Deshwar, MN Leathlobhair, J Wintersinger, ...
Nature methods 18 (2), 144-155, 2021
Reconstructing tumor evolutionary histories and clone trees in polynomial-time with SubMARine
LK Sundermann, J Wintersinger, G Rätsch, J Stoye, Q Morris
PLoS computational biology 17 (1), e1008400, 2021
Colorectal cancer cells enter a diapause-like DTP state to survive chemotherapy
SK Rehman, J Haynes, E Collignon, KR Brown, Y Wang, AML Nixon, ...
Cell 184 (1), 226-242. e21, 2021
Reconstructing complex cancer evolutionary histories from multiple bulk DNA samples using Pairtree
JA Wintersinger, SM Dobson, LD Stein, JE Dick, Q Morris
bioRxiv, 2020.11. 06.372219, 2021
Relapse-fated latent diagnosis subclones in acute B lineage leukemia are drug tolerant and possess distinct metabolic programs
SM Dobson, L García-Prat, RJ Vanner, J Wintersinger, E Waanders, Z Gu, ...
Cancer discovery 10 (4), 568-587, 2020
Live-animal imaging of native haematopoietic stem and progenitor cells
M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ...
Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig
Y Rubanova, R Shi, CF Harrigan, R Li, J Wintersinger, N Sahin, ...
Nature communications 11 (1), 1-12, 2020
The evolutionary history of 2,658 cancers
M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ...
Nature 578 (7793), 122-128, 2020
Pan-cancer analysis of whole genomes.
S Hirano, L Yang, M Juul, CA Purdie, BP O'Neill, R Kabbe, ...
Nature 578 (DKFZ-2020-01051), 82-93, 2020
Pairtree: fast reconstruction of cancer evolutionary history using pairwise mutation relationships
J Wintersinger, S Dobson, J Dick, Q Morris
bioRxiv, 2020
Pan-cancer analysis of whole genomes
I The, TPCA of Whole, Genomes Consortium
Nature 578 (7793), 82, 2020
A community effort to create standards for evaluating tumor subclonal reconstruction
A Salcedo, M Tarabichi, SMG Espiritu, AG Deshwar, M David, NM Wilson, ...
Nature biotechnology 38 (1), 97-107, 2020
Relapse-Initiating Clones Preexisting at Diagnosis in B-Cell Acute Lymphoblastic Leukemia Help Predict Molecular Pathways of Relapse
LG Prat, SM Dobson, M Chan-Seng-Yue, R Vanner, A Murison, ...
Blood 132, 915, 2018
The evolutionary landscape of localized prostate cancers drives clinical aggression
SMG Espiritu, LY Liu, Y Rubanova, V Bhandari, EM Holgersen, LM Szyca, ...
Cell 173 (4), 1003-1013. e15, 2018
One species, two genomes: A critical assessment of inter-isolate variation and identification of assembly incongruence in Haemonchus contortus
JA Wintersinger, GM Mariene, JD Wasmuth
bioRxiv, 384008, 2018
Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
BioRxiv, 312041, 2018
Abstract B2-59: PhyloSpan: Using multi-mutation reads to resolve subclonal architectures from heterogeneous tumor samples
AG Deshwar, L Boyles, J Wintersinger, PC Boutros, YW Teh, Q Morris
Cancer Research 75 (22 Supplement 2), B2-59-B2-59, 2015
Kablammo: an interactive, web-based BLAST results visualizer
JA Wintersinger, JD Wasmuth
Bioinformatics 31 (8), 1305-1306, 2015
An undergraduate perspective on LINDSAY Composer: bridging the gap between software engineering and physiology
DWK Yuen, T Karaman, J Wintersinger
Journal of Undergraduate Research in Alberta 3, 4-12, 2013
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