Jemma L Geoghegan
Jemma L Geoghegan
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Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families
JL Geoghegan, S Duchêne, EC Holmes
PLoS pathogens 13 (2), e1006215, 2017
Population-epigenetic models of selection
JL Geoghegan, HG Spencer
Theoretical population biology 81 (3), 232-242, 2012
Predicting virus emergence amid evolutionary noise
JL Geoghegan, EC Holmes
Open biology 7 (10), 170189, 2017
Virological factors that increase the transmissibility of emerging human viruses
JL Geoghegan, M Senior, Alistair, F Di Giallonardo, EC Holmes
Proceedings of the National Academy of Science in the USA, 2016
Phylodynamics of enterovirus A71-associated hand, foot, and mouth disease in Viet Nam
JL Geoghegan, D Kühnert, RA Halpin, X Lin, A Simenauer, A Akopov, ...
Journal of virology 89 (17), 8871-8879, 2015
Contact Heterogeneity, Rather Than Transmission Efficiency, Limits the Emergence and Spread of Canine Influenza Virus
BD Dalziel, K Huang, JL Geoghegan, N Arinaminpathy, EJ Dubovi, ...
PLOS Pathogens 10 (10), e1004455, 2014
Transgenerational epigenetics
Elsevier, 2014
Pathogen population bottlenecks and adaptive landscapes: overcoming the barriers to disease emergence
JL Geoghegan, AM Senior, EC Holmes
Proceedings of the Royal Society B: Biological Sciences 283 (1837), 20160727, 2016
Fluid spatial dynamics of West Nile virus in the United States: Rapid spread in a permissive host environment
F Di Giallonardo, JL Geoghegan, DE Docherty, RG McLean, MC Zody, ...
Journal of virology 90 (2), 862-872, 2016
Seasonal Drivers of the Epidemiology of Arthropod-Borne Viruses in Australia
JL Geoghegan, PJ Walker, JB Duchemin, I Jeanne, EC Holmes
PLOS Neglected Tropical Diseases 8 (11), e3325, 2014
Exploring epiallele stability in a population-epigenetic model
JL Geoghegan, HG Spencer
Theoretical Population Biology 83, 136–144, 2012
A generic assay for whole-genome amplification and deep sequencing of enterovirus A71
NTK Tuyen, TT Thanh, TT Ngan, HMT Van, S Sabanathan, TTM Van, ...
Journal of virological methods 215, 30-36, 2015
The phylogenomics of evolving virus virulence
JL Geoghegan, EC Holmes
Nature Reviews Genetics 19 (12), 756-769, 2018
Estimating evolutionary rates using time-structured data: a general comparison of phylogenetic methods
S Duchêne, JL Geoghegan, EC Holmes, SYW Ho
Bioinformatics, 2016
Continental synchronicity of human influenza virus epidemics despite climactic variation
JL Geoghegan, AF Saavedra, S Duchêne, S Sullivan, I Barr, EC Holmes
PLoS pathogens 14 (1), e1006780, 2018
The adaptive invasion of epialleles in a heterogeneous environment
JL Geoghegan, HG Spencer
Theoretical Population Biology 88, 1-8, 2013
The evolutionary potential of paramutation: A population-epigenetic model
JL Geoghegan, HG Spencer
Theoretical Population Biology 88, 9-19, 2013
Cross-validation to select Bayesian hierarchical models in phylogenetics
Sebastián Duchêne, David A. Duchêne, Francesca Di Giallonardo, John ...
BMC Evolutionary Biology 16 (115), 2016
Evolutionary virology at 40
JL Geoghegan, EC Holmes
Genetics 210 (4), 1151-1162, 2018
Molecular evolution and antigenic variation of European brown hare syndrome virus (EBHSV)
AM Lopes, L Capucci, D Gavier-Widén, G Le Gall-Reculé, E Brocchi, ...
Virology 468, 104-112, 2014
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