hiroyuki kuwahara
hiroyuki kuwahara
Research Scientist at KAUST
Verified email at kaust.edu.sa
TitleCited byYear
iBioSim: a tool for the analysis and design of genetic circuits
CJ Myers, N Barker, K Jones, H Kuwahara, C Madsen, NPD Nguyen
Bioinformatics 25 (21), 2848-2849, 2009
902009
An efficient and exact stochastic simulation method to analyze rare events in biochemical systems
H Kuwahara, I Mura
The Journal of chemical physics 129 (16), 10B619, 2008
722008
Automated abstraction methodology for genetic regulatory networks
H Kuwahara, CJ Myers, MS Samoilov, NA Barker, AP Arkin
Transactions on computational systems biology VI, 150-175, 2006
552006
Bistability in feedback circuits as a byproduct of evolution of evolvability
H Kuwahara, OS Soyer
Molecular systems biology 8 (1), 2012
422012
Learning genetic regulatory network connectivity from time series data
N Barker, C Myers, H Kuwahara
International Conference on Industrial, Engineering and Other Applications …, 2006
392006
Accurate prediction of hot spot residues through physicochemical characteristics of amino acid sequences
P Chen, J Li, L Wong, H Kuwahara, JZ Huang, X Gao
Proteins: Structure, Function, and Bioinformatics 81 (8), 1351-1362, 2013
352013
Learning genetic regulatory network connectivity from time series data
NA Barker, CJ Myers, H Kuwahara
IEEE/ACM transactions on computational biology and bioinformatics 8 (1), 152-165, 2009
332009
The design of a genetic muller c-element
NPD Nguyen, H Kuwahara, CJ Myers, JP Keener
13th IEEE International Symposium on Asynchronous Circuits and Systems …, 2007
312007
Temperature control of fimbriation circuit switch in uropathogenic Escherichia coli: quantitative analysis via automated model abstraction
H Kuwahara, CJ Myers, MS Samoilov
PLoS computational biology 6 (3), e1000723, 2010
292010
Stochastic steady state gain in a gene expression process with mRNA degradation control
H Kuwahara, R Schwartz
Journal of the Royal Society Interface 9 (72), 1589-1598, 2012
272012
A standard-enabled workflow for synthetic biology
CJ Myers, J Beal, TE Gorochowski, H Kuwahara, C Madsen, ...
Biochemical Society Transactions 45 (3), 793-803, 2017
222017
MRE: a web tool to suggest foreign enzymes for the biosynthesis pathway design with competing endogenous reactions in mind
H Kuwahara, M Alazmi, X Cui, X Gao
Nucleic acids research 44 (W1), W217-W225, 2016
202016
Model abstraction and temporal behavior analysis of genetic regulatory networks
H Kuwahara
Phd in computer science, University of Utah, 2007
202007
Design and analysis of a robust genetic Muller C-element
N Nguyen, C Myers, H Kuwahara, C Winstead, J Keener
Journal of theoretical biology 264 (2), 174-187, 2010
182010
Sequence2vec: a novel embedding approach for modeling transcription factor binding affinity landscape
H Dai, R Umarov, H Kuwahara, Y Li, L Song, X Gao
Bioinformatics 33 (22), 3575-3583, 2017
152017
Parameter estimation methods for gene circuit modeling from time-series mrna data: a comparative study
M Fan, H Kuwahara, X Wang, S Wang, X Gao
Briefings in bioinformatics 16 (6), 987-999, 2015
142015
Regulating the total level of a signaling protein can vary its dynamics in a range from switch like ultrasensitivity to adaptive responses
OS Soyer, H Kuwahara, A Csikász‐Nagy
The FEBS journal 276 (12), 3290-3298, 2009
132009
Genetic design automation
CJ Myers, N Barker, H Kuwahara, K Jones, C Madsen, NPD Nguyen
Proceedings of the 2009 International Conference on Computer-Aided Design …, 2009
102009
Modeling DNA affinity landscape through two-round support vector regression with weighted degree kernels
X Wang, H Kuwahara, X Gao
BMC systems biology 8 (5), S5, 2014
92014
Stochastic effects as a force to increase the complexity of signaling networks
H Kuwahara, X Gao
Scientific reports 3, 2297, 2013
92013
The system can't perform the operation now. Try again later.
Articles 1–20