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Rahulsimham vegesna
Rahulsimham vegesna
NCI
Verified email at nih.gov
Title
Cited by
Cited by
Year
The somatic genomic landscape of glioblastoma
CW Brennan, RGW Verhaak, A McKenna, B Campos, H Noushmehr, ...
Cell 155 (2), 462-477, 2013
38452013
Inferring tumour purity and stromal and immune cell admixture from expression data
K Yoshihara, M Shahmoradgoli, E Martínez, R Vegesna, H Kim, ...
Nature communications 4 (1), 1-11, 2013
29702013
Comprehensive molecular characterization of clear cell renal cell carcinoma
Cancer Genome Atlas Research Network
Nature 499 (7456), 43, 2013
22562013
The landscape and therapeutic relevance of cancer-associated transcript fusions
K Yoshihara, Q Wang, W Torres-Garcia, S Zheng, R Vegesna, H Kim, ...
Oncogene 34 (37), 4845-4854, 2015
3892015
Halogen interactions in protein–ligand complexes: implications of halogen bonding for rational drug design
S Sirimulla, JB Bailey, R Vegesna, M Narayan
Journal of chemical information and modeling 53 (11), 2781-2791, 2013
2262013
PRADA: pipeline for RNA sequencing data analysis
W Torres-García, S Zheng, A Sivachenko, R Vegesna, Q Wang, R Yao, ...
Bioinformatics 30 (15), 2224-2226, 2014
1552014
Inferring tumour purity and stromal and immune cell admixture from expression data. Nat Commun. 2013; 4: 2612
K Yoshihara, M Shahmoradgoli, E Martínez, R Vegesna, H Kim, ...
149
A survey of intragenic breakpoints in glioblastoma identifies a distinct subset associated with poor survival
S Zheng, J Fu, R Vegesna, Y Mao, LE Heathcock, W Torres-Garcia, ...
Genes & development 27 (13), 1462-1472, 2013
732013
Correcting palindromes in long reads after whole-genome amplification
S Warris, E Schijlen, H Van De Geest, R Vegesna, T Hesselink, ...
BMC genomics 19 (1), 1-12, 2018
132018
Dosage regulation, and variation in gene expression and copy number of human Y chromosome ampliconic genes
R Vegesna, M Tomaszkiewicz, P Medvedev, KD Makova
PLoS genetics 15 (9), e1008369, 2019
102019
Dynamic evolution of great ape Y chromosomes
M Cechova, R Vegesna, M Tomaszkiewicz, RS Harris, D Chen, ...
Proceedings of the National Academy of Sciences 117 (42), 26273-26280, 2020
82020
Ampliconic genes on the great ape Y chromosomes: Rapid evolution of copy number but conservation of expression levels
R Vegesna, M Tomaszkiewicz, OA Ryder, R Campos-Sánchez, ...
Genome biology and evolution 12 (6), 842-859, 2020
52020
Secondary structure predictions for long RNA sequences based on inversion excursions: preliminary results
DT Yehdego, B Zhang, M Taufer, VKR Kodimala, R Vegesna, ...
Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012
32012
DJ van den Berg, PW Laird, DH Gutmann, NL Lehman, EG VanMeir, D
CW Brennan, RGW Verhaak, A McKenna, B Campos, H Noushmehr, ...
Brat, JJ Olson, GM Mastrogianakis, NS Devi, Z. Zhang, D. Bigner, E. Lipp, R …, 2013
22013
The landscape of receptor-mediated precision cancer combination therapy via a single-cell perspective
S Ahmadi, P Sukprasert, R Vegesna, S Sinha, F Schischlik, N Artzi, ...
Nature communications 13 (1), 1-17, 2022
2022
Abstract CC01-01: The landscape of precision cancer combination therapy: A single-cell perspective
S Ahmadi, P Sukprasert, R Vegesna, S Sinha, F Schischlik, N Artzi, ...
Molecular Cancer Therapeutics 20 (12 Supplement), CC01-01-CC01-01, 2021
2021
The Landscape of Receptor-Mediated Precision Cancer Combination Therapy: A Single-Cell Perspective
S Ahmadi, P Sukprasert, R Vegesna, S Sinha, F Schischlik, N Artzi, ...
2021
Evolution of Y Chromosome Ampliconic Genes in Great Apes
R Vegesna
The Pennsylvania State University, 2020
2020
Whole-genome amplification (WGA) create specific chimeric fragments, which consist mainly of palindrome sequences. We developed the tool Pacasus to detect and correct these …
S Warris, E Schijlen, R Vegesna, T Hesselink, GF Sanchez Perez, ...
Wageningen UR, 2017
2017
The landscape of therapeutic targetable fusions
K Yoshihara, Q Wang, W Torres-Garcia, S Zheng, R Vegesna, H Kim, ...
Cancer Research 75 (15 Supplement), 3762-3762, 2015
2015
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Articles 1–20