Yong Cheng
Yong Cheng
Verified email at stjude.org - Homepage
TitleCited byYear
An integrated encyclopedia of DNA elements in the human genome.
BE Bernstein, E Birney, I Dunham, ED Green, C Gunter, M Snyder
Nature 489 (7414), 57, 2012
8816*2012
Annotation of functional variation in personal genomes using RegulomeDB
AP Boyle, EL Hong, M Hariharan, Y Cheng, MA Schaub, M Kasowski, ...
Genome research 22 (9), 1790-1797, 2012
14822012
Architecture of the human regulatory network derived from ENCODE data
MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ...
Nature 489 (7414), 91, 2012
11522012
Personal omics profiling reveals dynamic molecular and medical phenotypes
R Chen, GI Mias, J Li-Pook-Than, L Jiang, HYK Lam, R Chen, E Miriami, ...
Cell 148 (6), 1293-1307, 2012
9492012
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355, 2014
7422014
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
J Wang, J Zhuang, S Iyer, XY Lin, TW Whitfield, MC Greven, BG Pierce, ...
Genome research 22 (9), 1798-1812, 2012
6062012
Topologically associating domains are stable units of replication-timing regulation
BD Pope, T Ryba, V Dileep, F Yue, W Wu, O Denas, DL Vera, Y Wang, ...
Nature 515 (7527), 402, 2014
4652014
Diversity and clonal selection in the human T-cell repertoire
Q Qi, Y Liu, Y Cheng, J Glanville, D Zhang, JY Lee, RA Olshen, ...
Proceedings of the National Academy of Sciences 111 (36), 13139-13144, 2014
2772014
Insights into GATA-1-mediated gene activation versus repression via genome-wide chromatin occupancy analysis
M Yu, L Riva, H Xie, Y Schindler, TB Moran, Y Cheng, D Yu, R Hardison, ...
Molecular cell 36 (4), 682-695, 2009
2572009
The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome
YK Paik, SK Jeong, GS Omenn, M Uhlen, S Hanash, SY Cho, HJ Lee, ...
Nature Biotechnology 30 (3), 221-223, 2012
2512012
An encyclopedia of mouse DNA elements (Mouse ENCODE)
JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, T Gingeras, ...
Genome biology 13 (8), 418, 2012
2482012
Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression
Y Cheng, W Wu, SA Kumar, D Yu, W Deng, T Tripic, DC King, KB Chen, ...
Genome research 19 (12), 2172-2184, 2009
2012009
SCL and associated proteins distinguish active from repressive GATA transcription factor complexes
T Tripic, W Deng, Y Cheng, Y Zhang, CR Vakoc, GD Gregory, ...
Blood 113 (10), 2191-2201, 2009
1802009
Principles of regulatory information conservation between mouse and human
Y Cheng, Z Ma, BH Kim, W Wu, P Cayting, AP Boyle, V Sundaram, X Xing, ...
Nature 515 (7527), 371, 2014
1672014
Widespread contribution of transposable elements to the innovation of gene regulatory networks
V Sundaram, Y Cheng, Z Ma, D Li, X Xing, P Edge, MP Snyder, T Wang
Genome research 24 (12), 1963-1976, 2014
1502014
Comparative analysis of regulatory information and circuits across distant species
AP Boyle, CL Araya, C Brdlik, P Cayting, C Cheng, Y Cheng, K Gardner, ...
Nature 512 (7515), 453, 2014
1462014
Tissue-Specific Mitotic Bookmarking by Hematopoietic Transcription Factor GATA1
S Kadauke, MI Udugama, JM Pawlicki, JC Achtman, DP Jain, Y Cheng, ...
Cell 150 (4), 725-737, 2012
1402012
Bromodomain protein Brd3 associates with acetylated GATA1 to promote its chromatin occupancy at erythroid target genes
JM Lamonica, W Deng, S Kadauke, AE Campbell, R Gamsjaeger, ...
Proceedings of the National Academy of Sciences 108 (22), E159, 2011
1262011
Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
W Wu, Y Cheng, CA Keller, J Ernst, SA Kumar, T Mishra, C Morrissey, ...
Genome research 21 (10), 1659-1671, 2011
1102011
An encyclopedia of mouse DNA elements (Mouse ENCODE)
EC Mouse, JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, ...
Genome Biol 13 (8), 418, 2012
1052012
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