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Simon Joly
Simon Joly
Researcher, Montreal Botanical Garden | Adjunct Professor, Université de Montéal
Verified email at umontreal.ca - Homepage
Title
Cited by
Cited by
Year
A statistical approach for distinguishing hybridization and incomplete lineage sorting
S Joly, PA McLenachan, PJ Lockhart
The American Naturalist 174 (2), E54-E70, 2009
4292009
Fast Diploidization in Close Mesopolyploid Relatives of Arabidopsis
T Mandakova, S Joly, M Krzywinski, K Mummenhoff, MA Lysak
The Plant Cell 22 (7), 2277-2290, 2010
2102010
Increasing phytoremediation efficiency and reliability using novel omics approaches
TH Bell, S Joly, FE Pitre, E Yergeau
Trends in biotechnology 32 (5), 271-280, 2014
1852014
Incorporating Allelic Variation for Reconstructing the Evolutionary History of Organisms from Multiple Genes: An Example from Rosa in North America
S Joly, A Bruneau
Systematic Biology 55 (4), 623-636, 2006
1852006
Phylogenetic relationships in the genus Rosa: new evidence from chloroplast DNA sequences and an appraisal of current knowledge
A Bruneau, JR Starr, S Joly
Systematic Botany 32 (2), 366-378, 2007
1602007
An approach to transcriptome analysis of non-model organisms using short-read sequences
LJ Collins, P Biggs, C Voelckel, S Joly
Genome Informatics 21, 3-14, 2008
1582008
Phylogeny and biogeography of wild roses with specific attention to polyploids
M Fougère-Danezan, S Joly, A Bruneau, XF Gao, LB Zhang
Annals of Botany 115 (2), 275-291, 2015
1482015
Polyploid and hybrid evolution in roses east of the Rocky Mountains
S Joly, JR Starr, WH Lewis, A Bruneau
American Journal of Botany 93 (3), 412-425, 2006
1432006
Ecology in the age of DNA barcoding: the resource, the promise and the challenges ahead
S Joly, TJ Davies, A Archambault, A Bruneau, A Derry, SW Kembel, ...
Molecular Ecology Resources 14 (2), 221-232, 2014
1402014
JML: testing hybridization from species trees
S Joly
Molecular Ecology Resources 12 (1), 179-184, 2012
1202012
Demographic Signatures Accompanying the Evolution of Selfing in Leavenworthia alabamica
JW Busch, S Joly, DJ Schoen
Molecular Biology and Evolution 28 (5), 1717-1729, 2011
1052011
An evaluation of alternative explanations for widespread cytonuclear discordance in annual sunflowers (Helianthus)
JA Lee‐Yaw, CJ Grassa, S Joly, RL Andrew, LH Rieseberg
New Phytologist 221 (1), 515-526, 2019
952019
Haplotype networks can be misleading in the presence of missing data
S Joly, MI Stevens, BJ van Vuuren
Systematic biology 56 (5), 857-862, 2007
952007
Trees, fungi and bacteria: tripartite metatranscriptomics of a root microbiome responding to soil contamination
E Gonzalez, FE Pitre, AP Pagé, J Marleau, W Guidi Nissim, M St-Arnaud, ...
Microbiome 6, 1-30, 2018
822018
A Pleistocene inter-tribal allopolyploidization event precedes the species radiation of Pachycladon (Brassicaceae) in New Zealand
S Joly, PB Heenan, PJ Lockhart
Molecular phylogenetics and evolution 51 (2), 365-372, 2009
762009
Soil contamination alters the willow root and rhizosphere metatranscriptome and the root–rhizosphere interactome
E Yergeau, J Tremblay, S Joly, M Labrecque, C Maynard, FE Pitre, ...
The ISME journal 12 (3), 869-884, 2018
682018
Evolutionary dynamics and preferential expression of homeologous 18S-5.8 S-26S nuclear ribosomal genes in natural and artificial glycine allopolyploids
S Joly, JT Rauscher, SL Sherman-Broyles, AHD Brown, JJ Doyle
Molecular Biology and Evolution 21 (7), 1409-1421, 2004
652004
Evolution and Phylogenetic Diversity of Yam Species (Dioscorea spp.): Implication for Conservation and Agricultural Practices
MFS Ngo Ngwe, DN Omokolo, S Joly
PLoS one 10 (12), e0145364, 2015
552015
Delimiting species boundaries in Rosa sect. Cinnamomeae (Rosaceae) in eastern North America
S Joly, A Bruneau
Systematic Botany 32 (4), 819-836, 2007
502007
Evolution of triploidy in Apios americana (Leguminosae) revealed by the genealogical analysis of the histone H3-D gene
S Joly, A Bruneau
Evolution 58 (2), 284-295, 2004
462004
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Articles 1–20