|The human mitochondrial transcriptome|
TR Mercer, S Neph, ME Dinger, J Crawford, MA Smith, AMJ Shearwood, ...
Cell 146 (4), 645-658, 2011
|The melanoma‐upregulated long noncoding RNA SPRY4-IT1 modulates apoptosis and invasion|
D Khaitan, ME Dinger, J Mazar, J Crawford, MA Smith, JS Mattick, ...
Cancer research 71 (11), 3852-3862, 2011
|RNA duplex map in living cells reveals higher-order transcriptome structure|
Z Lu, QC Zhang, B Lee, RA Flynn, MA Smith, JT Robinson, C Davidovich, ...
Cell 165 (5), 1267-1279, 2016
|SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer|
ME Askarian-Amiri, J Crawford, JD French, CE Smart, MA Smith, MB Clark, ...
Rna 17 (5), 878-891, 2011
|Genome-wide gene expression profiling analysis of Leishmania major and Leishmania infantum developmental stages reveals substantial differences between the two species|
A Rochette, F Raymond, JM Ubeda, M Smith, N Messier, S Boisvert, ...
BMC genomics 9 (1), 255, 2008
|Widespread purifying selection on RNA structure in mammals|
MA Smith, T Gesell, PF Stadler, JS Mattick
Nucleic Acids Research, 10.1093/nar/gkt596, 2013
|Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania|
F Bringaud, M Müller, GC Cerqueira, M Smith, A Rochette, NMA El-Sayed, ...
PLoS Pathog 3 (9), e136, 2007
|The RNA modification landscape in human disease|
N Jonkhout, J Tran, MA Smith, N Schonrock, JS Mattick, EM Novoa
Rna 23 (12), 1754-1769, 2017
|The dark matter rises: the expanding world of regulatory RNAs|
MA Lindsay, S Griffiths-Jones, MB Clark, A Choudhary, MA Smith, RJ Taft, ...
Essays in biochemistry 54, 1-16, 2013
|Organization and evolution of two SIDER retroposon subfamilies and their impact on the Leishmania genome|
MA Smith, F Bringaud, B Papadopoulou
BMC genomics 10 (1), 240, 2009
|Accurate detection of m 6 A RNA modifications in native RNA sequences|
H Liu, O Begik, MC Lucas, JM Ramirez, CE Mason, D Wiener, S Schwartz, ...
Nature communications 10 (1), 1-9, 2019
|Pregnancy-induced noncoding RNA (PINC) associates with polycomb repressive complex 2 and regulates mammary epithelial differentiation|
AN Shore, EB Kabotyanski, K Roarty, MA Smith, Y Zhang, CJ Creighton, ...
PLoS Genet 8 (7), e1002840, 2012
|Rapid decay of unstable Leishmania mRNAs bearing a conserved retroposon signature 3′-UTR motif is initiated by a site-specific endonucleolytic cleavage without prior deadenylation|
M Müller, PK Padmanabhan, A Rochette, D Mukherjee, M Smith, ...
Nucleic acids research 38 (17), 5867, 2010
|High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes|
M Singh, G Al-Eryani, S Carswell, JM Ferguson, J Blackburn, K Barton, ...
Nature communications 10 (1), 1-13, 2019
|Unexpected host dependency of Antarctic Nanohaloarchaeota|
JN Hamm, S Erdmann, EA Eloe-Fadrosh, A Angeloni, L Zhong, ...
Proceedings of the National Academy of Sciences 116 (29), 14661-14670, 2019
|Improving the prediction of mRNA extremities in the parasitic protozoan Leishmania|
MA Smith, M Blanchette, B Papadopoulou
BMC bioinformatics 9 (1), 158, 2008
|Synthetic microbe communities provide internal reference standards for metagenome sequencing and analysis|
SA Hardwick, WY Chen, T Wong, BS Kanakamedala, IW Deveson, ...
Nature communications 9 (1), 1-10, 2018
|NGSANE: a lightweight production informatics framework for high-throughput data analysis|
FA Buske, HJ French, MA Smith, SJ Clark, DC Bauer
Bioinformatics 30 (10), 1471-1472, 2014
|Intronic ATTTC repeat expansions in STARD7 in familial adult myoclonic epilepsy linked to chromosome 2|
MA Corbett, T Kroes, L Veneziano, MF Bennett, R Florian, AL Schneider, ...
Nature communications 10 (1), 1-10, 2019
|Structural and functional annotation of long noncoding RNAs|
MA Smith, JS Mattick
Bioinformatics, 65-85, 2017