Involvement of G-triplex and G-hairpin in the multi-pathway folding of human telomeric G-quadruplex XM Hou, YB Fu, WQ Wu, L Wang, FY Teng, P Xie, PY Wang, XG Xi Nucleic acids research 45 (19), 11401-11412, 2017 | 71 | 2017 |
NERDSS: a nonequilibrium simulator for multibody self-assembly at the cellular scale MJ Varga, Y Fu, S Loggia, ON Yogurtcu, ME Johnson Biophysical Journal 118 (12), 3026-3040, 2020 | 26 | 2020 |
Investigating role of conformational changes of microtubule in regulating its binding affinity to kinesin by all‐atom molecular dynamics simulation XX Shi, YB Fu, SK Guo, PY Wang, H Chen, P Xie Proteins: Structure, Function, and Bioinformatics 86 (11), 1127-1139, 2018 | 25 | 2018 |
An implicit lipid model for efficient reaction-diffusion simulations of protein binding to surfaces of arbitrary topology Y Fu, ON Yogurtcu, R Kothari, G Thorkelsdottir, AJ Sodt, ME Johnson The Journal of Chemical Physics 151 (12), 2019 | 13 | 2019 |
A continuum membrane model can predict curvature sensing by helix insertion Y Fu, WF Zeno, JC Stachowiak, ME Johnson Soft Matter 17 (47), 10649-10663, 2021 | 8 | 2021 |
Dynamics of cooperative cargo transport by two elastically coupled kinesin motors YB Fu, SK Guo, PY Wang, P Xie The European Physical Journal E 42, 1-13, 2019 | 7 | 2019 |
A revised worm‐like chain model for elasticity of polypeptide chains YB Fu, YR Liu, PY Wang, P Xie Journal of Polymer Science Part B: Polymer Physics 56 (4), 297-307, 2018 | 6 | 2018 |
D ynamics of bridge helix bending in RNA polymerase II ZF Wang, YB Fu, PY Wang, P Xie Proteins: Structure, Function, and Bioinformatics 85 (4), 614-629, 2017 | 5 | 2017 |
Brownian ratchet mechanism of translocation in T7 RNA polymerase facilitated by a post-translocation energy bias arising from the conformational change of the enzyme ZF Wang, ZQ Zhang, YB Fu, PY Wang, P Xie Chinese Physics B 26 (3), 030201, 2017 | 4 | 2017 |
Temporal control by cofactors prevents kinetic trapping in retroviral Gag lattice assembly Y Qian, D Evans, B Mishra, Y Fu, ZH Liu, S Guo, ME Johnson Biophysical Journal 122 (15), 3173-3190, 2023 | 3 | 2023 |
Optimal numbers of residues in linkers of DNA polymerase I, T7 primase and DNA polymerase IV YB Fu, ZF Wang, PY Wang, P Xie Scientific Reports 6 (1), 29125, 2016 | 3 | 2016 |
Modeling membrane reshaping driven by dynamic protein assemblies Y Fu, ME Johnson Current opinion in structural biology 78, 102505, 2023 | 1 | 2023 |