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Surya Saha
Surya Saha
Boyce Thompson Institute, Seven Bridges
Verified email at cornell.edu - Homepage
Title
Cited by
Cited by
Year
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
7272017
The Sol Genomics Network (SGN)—from genotype to phenotype to breeding
N Fernandez-Pozo, N Menda, JD Edwards, S Saha, IY Tecle, SR Strickler, ...
Nucleic acids research 43 (D1), D1036-D1041, 2015
6282015
Empirical comparison of ab initio repeat finding programs
S Saha, S Bridges, ZV Magbanua, DG Peterson
Nucleic acids research 36 (7), 2284-2294, 2008
2932008
An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps
PS Hosmani, M Flores-Gonzalez, H van de Geest, F Maumus, LV Bakker, ...
biorxiv, 767764, 2019
1662019
Graph pangenome captures missing heritability and empowers tomato breeding
Y Zhou, Z Zhang, Z Bao, H Li, Y Lyu, Y Zan, Y Wu, L Cheng, Y Fang, K Wu, ...
Nature 606 (7914), 527-534, 2022
1432022
Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter …
A Kruse, S Fattah-Hosseini, S Saha, R Johnson, ER Warwick, K Sturgeon, ...
PloS one 12 (6), e0179531, 2017
1262017
Traits of selected Clostridium strains for syngas fermentation to ethanol
ME Martin, H Richter, S Saha, LT Angenent
Biotechnology and bioengineering 113 (3), 531-539, 2016
1142016
Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding
X Wang, L Gao, C Jiao, S Stravoravdis, PS Hosmani, S Saha, J Zhang, ...
Nature communications 11 (1), 5817, 2020
1122020
Survey of endosymbionts in the Diaphorina citri metagenome and assembly of a Wolbachia wDi draft genome
S Saha, WB Hunter, J Reese, JK Morgan, M Marutani-Hert, H Huang, ...
PloS one 7 (11), e50067, 2012
892012
Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community
S Saha, PS Hosmani, K Villalobos-Ayala, S Miller, T Shippy, M Flores, ...
Database 2017, bax032, 2017
792017
Computational approaches and tools used in identification of dispersed repetitive DNA sequences
S Saha, S Bridges, ZV Magbanua, DG Peterson
Tropical Plant Biology 1, 85-96, 2008
792008
An annotated genetic map of loblolly pine based on microsatellite and cDNA markers
CS Echt, S Saha, KV Krutovsky, K Wimalanathan, JE Erpelding, C Liang, ...
Bmc Genetics 12, 1-16, 2011
772011
Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community
S Saha, PS Hosmani, K Villalobos-Ayala, S Miller, T Shippy, M Flores, ...
Database 2017, bax032, 2017
732017
Characterization of the Asian citrus psyllid transcriptome
J Reese, MK Christenson, N Leng, S Saha, B Cantarel, M Lindeberg, ...
Journal of genomics 2, 54, 2014
552014
The Ptr1 locus of Solanum lycopersicoides confers resistance to race 1 strains of Pseudomonas syringae pv. tomato and to Ralstonia pseudosolanacearum by recognizing the type …
C Mazo-Molina, S Mainiero, SR Hind, CM Kraus, M Vachev, ...
Molecular Plant-Microbe Interactions 32 (8), 949-960, 2019
422019
Longitudinal Transcriptomic, Proteomic, and Metabolomic Analyses of Citrus sinensis (L.) Osbeck Graft-Inoculated with “Candidatus Liberibacter asiaticus”
EL Chin, JS Ramsey, DO Mishchuk, S Saha, E Foster, JD Chavez, ...
Journal of proteome research 19 (2), 719-732, 2019
392019
A quick guide for student-driven community genome annotation
PS Hosmani, T Shippy, S Miller, JB Benoit, M Munoz-Torres, ...
PLoS computational biology 15 (4), e1006682, 2019
362019
Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening
O Jouffroy, S Saha, L Mueller, H Quesneville, F Maumus
BMC genomics 17, 1-15, 2016
352016
Chromosomal length reference assembly for Diaphorina citri using single-molecule sequencing and Hi-C proximity ligation with manually curated genes in developmental, structural …
PS Hosmani, M Flores-Gonzalez, T Shippy, C Vosburg, C Massimino, ...
Biorxiv 10, 869685, 2019
322019
Citrusgreening. org: An open access and integrated systems biology portal for the Huanglongbing (HLB) disease complex
M Flores-Gonzalez, PS Hosmani, N Fernandez-Pozo, M Mann, ...
BioRxiv, 868364, 2019
292019
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