David A. Knowles
David A. Knowles
Columbia University & New York Genome Center
Verified email at columbia.edu - Homepage
TitleCited byYear
Mapping cis- and trans-regulatory effects across multiple tissues in twins
E Grundberg, KS Small, ÅK Hedman, AC Nica, A Buil, S Keildson, JT Bell, ...
Nature genetics 44 (10), 1084, 2012
6492012
A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ...
Nature biotechnology 32 (12), 1202, 2014
3552014
Global analysis of DNA methylation variation in adipose tissue from twins reveals links to disease-associated variants in distal regulatory elements
E Grundberg, E Meduri, JK Sandling, ÅK Hedman, S Keildson, A Buil, ...
The American Journal of Human Genetics 93 (5), 876-890, 2013
2582013
RNA splicing is a primary link between genetic variation and disease
YI Li, B Van De Geijn, A Raj, DA Knowles, AA Petti, D Golan, Y Gilad, ...
Science 352 (6285), 600-604, 2016
2532016
Infer.NET 2.4
T Minka, J Winn, J Guiver, D Knowles
Microsoft Research Cambridge http://research.microsoft.com/infernet, 2010
201*2010
Distinct epigenomic features in end-stage failing human hearts
M Movassagh, MK Choy, DA Knowles, L Cordeddu, S Haider, T Down, ...
Circulation 124 (22), 2411-2422, 2011
1962011
Therapeutic reduction of ataxin-2 extends lifespan and reduces pathology in TDP-43 mice
LA Becker, B Huang, G Bieri, R Ma, DA Knowles, P Jafar-Nejad, ...
Nature 544 (7650), 367, 2017
1832017
Gene expression changes with age in skin, adipose tissue, blood and brain
D Glass, A Viñuela, MN Davies, A Ramasamy, L Parts, D Knowles, ...
Genome biology 14 (7), R75, 2013
1552013
Infer.NET 2.5
T Minka, J Winn, J Guiver, D Knowles
Microsoft Research Cambridge http://research.microsoft.com/infernet, 2012
147*2012
Fixed-form variational posterior approximation through stochastic linear regression
T Salimans, DA Knowles
Bayesian Analysis 8 (4), 837-882, 2013
1412013
Infinite sparse factor analysis and infinite independent components analysis
D Knowles, Z Ghahramani
International Conference on Independent Component Analysis and Signal …, 2007
1332007
Batch effects and the effective design of single-cell gene expression studies
PY Tung, JD Blischak, CJ Hsiao, DA Knowles, JE Burnett, JK Pritchard, ...
Scientific reports 7, 39921, 2017
1252017
Nonparametric Bayesian sparse factor models with application to gene expression modeling
D Knowles, Z Ghahramani
The Annals of Applied Statistics 5 (2B), 1534-1552, 2011
1202011
An infinite latent attribute model for network data
K Palla, D Knowles, Z Ghahramani
Proceedings of the 30th International Conference on Machine Learning, 2012
1042012
Differential methylation of the TRPA1 promoter in pain sensitivity
JT Bell, AK Loomis, LM Butcher, F Gao, B Zhang, CL Hyde, J Sun, H Wu, ...
Nature communications 5, 2978, 2014
1032014
Annotation-free quantification of RNA splicing using LeafCutter
YI Li, DA Knowles, J Humphrey, AN Barbeira, SP Dickinson, HK Im, ...
Nature genetics 50 (1), 151, 2018
952018
Gaussian Process Regression Networks
AG Wilson, DA Knowles, Z Ghahramani
Proceedings of the 29th International Conference on Machine Learning (ICML 2011), 2011
942011
Non-conjugate Variational Message Passing for Multinomial and Binary Regression
DA Knowles, TP Minka
Advances in Neural Information Processing Systems, 2011
932011
No correlation between childhood maltreatment and telomere length
D Glass, L Parts, D Knowles, A Aviv, TD Spector
Biological psychiatry 68 (6), e21-e22, 2010
792010
Characterization of functional methylomes by next-generation capture sequencing identifies novel disease-associated variants
F Allum, X Shao, F Guénard, MM Simon, S Busche, M Caron, ...
Nature communications 6, 7211, 2015
602015
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Articles 1–20