Jaak Simm
Jaak Simm
Postdoctoral researcher, University of Leuven
Verified email at esat.kuleuven.be
Title
Cited by
Cited by
Year
Characterization of the vaginal micro-and mycobiome in asymptomatic reproductive-age Estonian women
T Drell, T Lillsaar, L Tummeleht, J Simm, A Aaspõllu, E Väin, I Saarma, ...
PloS one 8 (1), e54379, 2013
1462013
Repurposing high-throughput image assays enables biological activity prediction for drug discovery
J Simm, G Klambauer, A Arany, M Steijaert, JK Wegner, E Gustin, ...
Cell chemical biology 25 (5), 611-618. e3, 2018
692018
Research resource: small RNA-seq of human granulosa cells reveals miRNAs in FSHR and aromatase genes
A Velthut-Meikas, J Simm, T Tuuri, JS Tapanainen, M Metsis, A Salumets
Molecular endocrinology 27 (7), 1128-1141, 2013
452013
High-throughput sequencing approach uncovers the miRNome of peritoneal endometriotic lesions and adjacent healthy tissues
M Saare, K Rekker, T Laisk-Podar, D Sõritsa, AM Roost, J Simm, ...
PloS one 9 (11), e112630, 2014
442014
Changes in the transcriptome of the human endometrial Ishikawa cancer cell line induced by estrogen, progesterone, tamoxifen, and mifepristone (RU486) as detected by RNA-sequencing
K Tamm-Rosenstein, J Simm, M Suhorutshenko, A Salumets, M Metsis
PLoS One 8 (7), e68907, 2013
442013
Evolution of bacterial consortia in spontaneously started rye sourdoughs during two months of daily propagation
M Bessmeltseva, E Viiard, J Simm, T Paalme, I Sarand
PLoS One 9 (4), e95449, 2014
382014
Easy hyperparameter search using optunity
M Claesen, J Simm, D Popovic, Y Moreau, B De Moor
arXiv preprint arXiv:1412.1114, 2014
352014
The development of gut microbiota in critically ill extremely low birth weight infants assessed with 16S rRNA gene based sequencing
T Drell, I Lutsar, J Štšepetova, Ü Parm, T Metsvaht, ML Ilmoja, J Simm, ...
Gut Microbes 5 (3), 304-503, 2014
342014
Tree-based ensemble multi-task learning method for classification and regression
J Simm, IM de Abril, M Sugiyama
IEICE TRANSACTIONS on Information and Systems 97 (6), 1677-1681, 2014
272014
Endometrial transcriptome analysis indicates superiority of natural over artificial cycles in recurrent implantation failure patients undergoing frozen embryo transfer
S Altmäe, K Tamm-Rosenstein, FJ Esteban, J Simm, L Kolberg, ...
Reproductive biomedicine online 32 (6), 597-613, 2016
262016
Hyperparameter tuning in Python using Optunity
M Claesen, J Simm, D Popovic, BD Moor
Proceedings of the International Workshop on Technical Computing for Machine …, 2014
262014
Macau: Scalable Bayesian factorization with high-dimensional side information using MCMC
J Simm, A Arany, P Zakeri, T Haber, JK Wegner, V Chupakhin, ...
2017 IEEE 27th International Workshop on Machine Learning for Signal …, 2017
242017
The influence of different maternal microbial communities on the development of infant gut and oral microbiota
T Drell, J Štšepetova, J Simm, K Rull, A Aleksejeva, A Antson, V Tillmann, ...
Scientific reports 7 (1), 1-9, 2017
242017
Linking drug target and pathway activation for effective therapy using multi-task learning
M Yang, J Simm, CC Lam, P Zakeri, GJP van Westen, Y Moreau, ...
Scientific reports 8 (1), 1-10, 2018
222018
Diversity and stability of lactic acid bacteria in rye sourdoughs of four bakeries with different propagation parameters
E Viiard, M Bessmeltseva, J Simm, T Talve, A Aaspõllu, T Paalme, ...
PloS one 11 (2), e0148325, 2016
222016
Macau: scalable bayesian multi-relational factorization with side information using MCMC
J Simm, A Arany, P Zakeri, T Haber, JK Wegner, V Chupakhin, ...
arXiv preprint arXiv:1509.04610, 2015
222015
GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks
T Moerman, S Aibar Santos, C Bravo González-Blas, J Simm, Y Moreau, ...
Bioinformatics 35 (12), 2159-2161, 2019
212019
Direct importance estimation with a mixture of probabilistic principal component analyzers
M Yamada, M Sugiyama, G Wichern, J Simm
IEICE Transactions on Information and Systems 93 (10), 2846-2849, 2010
192010
RDEA: robust data envelopment analysis (DEA) for R
J Simm, G Besstremyannaya
R, 2015
172015
Spatial variability of winter bacterioplankton community composition in the Gulf of Finland (the Baltic Sea)
P Laas, J Simm, I Lips, M Metsis
Journal of Marine Systems 129, 127-134, 2014
172014
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Articles 1–20