Joana P. Gonçalves
Joana P. Gonçalves
Assistant Professor at TUDelft
Verified email at joanagoncalves.org - Homepage
Title
Cited by
Cited by
Year
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
MC Teixeira, PT Monteiro, JF Guerreiro, JP Gonçalves, NP Mira, ...
Nucleic acids research 42 (D1), D161-D166, 2014
2562014
Candidate gene prioritization by network analysis of differential expression using machine learning approaches
D Nitsch, J Gonçalves, F Ojeda, B De Moor, Y Moreau
BMC bioinformatics 11 (1), 460, 2010
1092010
Predicting disease associations via biological network analysis
K Sun, JP Gonçalves, C Larminie, N Pržulj
BMC bioinformatics 15 (1), 304, 2014
872014
BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data
J Gonçalves, S Madeira, A Oliveira
BMC research notes 2 (1), 124, 2009
742009
PINTA: a web server for network-based gene prioritization from expression data
D Nitsch, LC Tranchevent, JP Gonçalves, JK Vogt, SC Madeira, Y Moreau
Nucleic Acids Research 39 (suppl 2), W334-W338, 2011
682011
Interactogeneous: Disease Gene Prioritization Using Heterogeneous Networks and Full Topology Scores
JP Gonçalves, AP Francisco, Y Moreau, SC Madeira
PLOS ONE 7 (11), e49634, 2012
342012
POLAR MAPPER: a computational tool for integrated visualization of protein interaction networks and mRNA expression data
JP Gonçalves, M Grãos, AXCN Valente
Journal of The Royal Society Interface 6 (39), 881-896, 2009
202009
Multiplexed Cas9 targeting reveals genomic location effects and gRNA-based staggered breaks influencing mutation efficiency
S Gisler, JP Gonçalves, W Akhtar, J de Jong, AV Pindyurin, LFA Wessels, M ...
Nature Communications, 2019
162019
TFRank: network-based prioritization of regulatory associations underlying transcriptional responses
JP Gonçalves, AP Francisco, NP Mira, MC Teixeira, I Sá-Correia, ...
Bioinformatics 27 (22), 3149-3157, 2011
162011
LateBiclustering: Efficient Heuristic Algorithm for Time-Lagged Bicluster Identification
JP Gonçalves, SC Madeira
IEEE/ACM Transactions on Computational Biology and Bioinformatics, doi:10 …, 2014
112014
e-BiMotif: combining sequence alignment and biclustering to unravel structured motifs
J Gonçalves, S Madeira
Advances in Bioinformatics, 181-191, 2010
112010
Regulatory Snapshots: Integrative Mining of Regulatory Modules from Expression Time Series and Regulatory Networks
JP Gonçalves, RS Aires, AP Francisco, SC Madeira
PloS one 7 (5), e35977, 2012
82012
Efficient Biclustering Algorithms for identifying transcriptional regulation relationships using time series gene expression data
SC Madeira, JP Gonçalves, AL Oliveira
INESC-ID Tec. Rep. 22/2007, 2007
52007
AliBiMotif: Integrating alignment and biclustering to unravel Transcription Factor Binding Sites in DNA sequences
JP Gonçalves, Y Moreau, SC Madeira
International journal of data mining and bioinformatics 6 (2), 196-215, 2012
32012
Heuristic approaches for time-lagged biclustering
JP Gonçalves, SC Madeira
Proceedings of the 12th International Workshop on Data Mining in …, 2013
12013
Network-Based Disease Candidate Gene Prioritization: Towards Global Diffusion in Heterogeneous Association Networks
JP Gonçalves, SC Madeira, Y Moreau
DyNaK 2010 Dynamic Networks and Knowledge Discovery, 53, 2010
12010
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Articles 1–16