| Estimating the time-varying reproduction number of SARS-CoV-2 using national and subnational case counts S Abbott, J Hellewell, RN Thompson, K Sherratt, HP Gibbs, NI Bosse, ... Wellcome Open Research 5 (112), 112, 2020 | 312* | 2020 |
| Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer EL Doughty, MJ Sergeant, I Adetifa, M Antonio, MJ Pallen PeerJ 2, e585, 2014 | 142 | 2014 |
| Whole-genome sequencing reveals transmission of Staphylococcus aureus from humans to green monkeys in The Gambia M Senghore, SC Bayliss, BA Kwambana-Adams, E Foster-Nyarko, ... Appl Environ Microbiol 82 (19), 01496-16, 2016 | 47* | 2016 |
| Whole-genome sequencing illuminates the evolution and spread of multidrug-resistant tuberculosis in Southwest Nigeria M Senghore, J Otu, A Witney, F Gehre, EL Doughty, GL Kay, P Butcher, ... PloS one 12 (9), e0184510, 2017 | 40 | 2017 |
| Transferable Acinetobacter baumannii plasmid pDETAB2 encodes OXA-58 and NDM-1 and represents a new class of antibiotic resistance plasmids H Liu, RA Moran, Y Chen, EL Doughty, X Hua, Y Jiang, Q Xu, L Zhang, ... Journal of Antimicrobial Chemotherapy 76 (5), 1130-1134, 2021 | 28 | 2021 |
| Dynamics of Salmonella enterica and antimicrobial resistance in the Brazilian poultry industry and global impacts on public health NF Alikhan, LZ Moreno, LR Castellanos, MA Chattaway, J McLauchlin, ... PLoS Genetics 18 (6), e1010174, 2022 | 23 | 2022 |
| Evolution and dissemination of L and M plasmid lineages carrying antibiotic resistance genes in diverse Gram-negative bacteria GA Blackwell, EL Doughty, RA Moran Plasmid 113, 102528, 2021 | 15 | 2021 |
| Spread of carbapenem-resistant Klebsiella pneumoniae in an intensive care unit: a whole-genome sequence-based prospective observational study L Wei, L Wu, H Wen, Y Feng, S Zhu, Y Liu, L Tang, E Doughty, ... Microbiology spectrum 9 (1), 10.1128/spectrum. 00058-21, 2021 | 14 | 2021 |
| Endemicity and diversification of carbapenem-resistant Acinetobacter baumannii in an intensive care unit EL Doughty, H Liu, RA Moran, X Hua, X Ba, F Guo, X Chen, L Zhang, ... The Lancet Regional Health–Western Pacific 37, 2023 | 11 | 2023 |
| GR13-type plasmids in Acinetobacter potentiate the accumulation and horizontal transfer of diverse accessory genes RA Moran, H Liu, EL Doughty, X Hua, EA Cummins, T Liveikis, A McNally, ... Microbial Genomics 8 (6), 000840, 2022 | 11 | 2022 |
| Accelerating bioinformatics implementation in public health KG Libuit, EL Doughty, JR Otieno, F Ambrosio, CJ Kapsak, EA Smith, ... Microbial Genomics 9 (7), 001051, 2023 | 6 | 2023 |
| Spread of carbapenem-resistant Klebsiella pneumoniae in an intensive care unit: a whole-genome sequence-based prospective observational study. Microbiol Spectr 9: e0005821 L Wei, L Wu, H Wen, Y Feng, S Zhu, Y Liu, L Tang, E Doughty, ... | 5 | 2021 |
| Extended-Spectrum β-Lactamase Genes Traverse the Escherichia coli Populations of Intensive Care Unit Patients, Staff, and Environment RA Moran, L Baomo, EL Doughty, Y Guo, X Ba, W van Schaik, C Zhuo, ... Microbiology spectrum 11 (2), e05074-22, 2023 | 4 | 2023 |
| Global emergence of a hypervirulent carbapenem-resistant Escherichia coli ST410 clone X Ba, Y Guo, RA Moran, EL Doughty, B Liu, L Yao, J Li, N He, S Shen, ... Nature Communications 15 (1), 494, 2024 | 2 | 2024 |
| TheiaEuk: a species-agnostic bioinformatics workflow for fungal genomic characterization FJ Ambrosio III, MR Scribner, SM Wright, JR Otieno, EL Doughty, ... Frontiers in Public Health 11, 1198213, 2023 | 2 | 2023 |
| Changes to an intensive care unit Acinetobacter baumannii population following COVID-19 disruptions and targeted infection prevention interventions H Liu, RA Moran, EL Doughty, X Hua, AE Snaith, L Zhang, X Chen, F Guo, ... medRxiv, 2024.02. 02.24302174, 2024 | | 2024 |
| Escherichia coli Populations of Intensive Care Unit Patients, Staff, and Environment RA Moran, L Baomo, EL Doughty, Y Guo, X Ba spectrum 5074, 22, 2023 | | 2023 |
| Extended-spectrum β-lactamase genes traverse the Escherichia coli populations of ICU patients, staff and environment RA Moran, L Baomo, EL Doughty, Y Guo, X Ba, W van Schaik, C Zhuo, ... bioRxiv, 2022.12. 08.519559, 2022 | | 2022 |
| Extensive acquisition of carbapenem-resistant Acinetobacter baumannii in Intensive Care Unit patients is driven by widespread environmental contamination EL Doughty, H Liu, RA Moran, X Hua, X Ba, F Guo, X Chen, L Zhang, ... medRxiv, 2022.05. 19.22275186, 2022 | | 2022 |
