| Clonal decomposition and DNA replication states defined by scaled single-cell genome sequencing E Laks, A McPherson, H Zahn, D Lai, A Steif, J Brimhall, J Biele, B Wang, ... Cell 179 (5), 1207-1221. e22, 2019 | 179 | 2019 |
| Cytokine release syndrome-like serum responses after COVID-19 vaccination are frequent and clinically inapparent under cancer immunotherapy T Walle, S Bajaj, JA Kraske, T Rösner, CS Cussigh, KA Kälber, LJ Müller, ... Nature Cancer 3 (9), 1039-1051, 2022 | 15 | 2022 |
| Supervised discovery of interpretable gene programs from single-cell data RZ Kunes, T Walle, M Land, T Nawy, D Pe’er Nature Biotechnology, 1-12, 2023 | 12 | 2023 |
| Prediction focused topic models via feature selection J Ren, R Kunes, F Doshi-Velez International Conference on Artificial Intelligence and Statistics, 4420-4429, 2020 | 9 | 2020 |
| Cross-platform analysis reveals cellular and molecular landscape of glioblastoma invasion AT Chen, Y Xiao, X Tang, M Baqri, X Gao, M Reschke, WC Sheu, G Long, ... Neuro-oncology 25 (3), 482-494, 2023 | 4 | 2023 |
| Prediction focused topic models via vocab selection J Ren, R Kunes, F Doshi-Velez arXiv preprint arXiv, 1910 | 3 | 1910 |
| Gradient estimation for binary latent variables via gradient variance clipping RZ Kunes, M Yin, M Land, D Haviv, D Pe'er, S Tavaré Proceedings of the AAAI Conference on Artificial Intelligence 37 (7), 8405-8412, 2023 | 2 | 2023 |
| Leptomeningeal anti-tumor immunity follows unique signaling principles J Remsik, X Tong, RZ Kunes, MJ Li, A Osman, K Chabot, UT Sener, ... bioRxiv, 2023.03. 17.533041, 2023 | 2 | 2023 |
| SPOT: Spatial Optimal Transport for Analyzing Cellular Microenvironments S Mani, D Haviv, R Kunes, D Pe'er NeurIPS 2022 Workshop on Learning Meaningful Representations of Life, 2022 | 2 | 2022 |
| SpatialSort: A Bayesian Model for Clustering and Cell Population Annotation of Spatial Proteomics Data E Lee, K Chern, M Nissen, X Wang, IMAXT Consortium, C Huang, ... bioRxiv, 2022.07. 27.499974, 2022 | 1 | 2022 |
| Prediction focused topic models for electronic health records J Ren, R Kunes, F Doshi-Velez arXiv preprint arXiv:1911.08551, 2019 | 1 | 2019 |
| Wasserstein Wormhole: Scalable Optimal Transport Distance with Transformers D Haviv, RZ Kunes, T Dougherty, C Burdziak, T Nawy, A Gilbert, D Pe'er arXiv preprint arXiv:2404.09411, 2024 | | 2024 |
| Topological defects induced by MSC-cancer interaction correlate with cancer cell apoptosis S He, YH Lao, S Shankar, R Kunes, R Berris, JH Lee, E Azizi, K Leong, ... APS March Meeting Abstracts 2023, CCC09. 001, 2023 | | 2023 |
| Cytokine release syndrome-like serum responses after COVID-19 vaccination are frequent but clinically inapparent in cancer patients under immune checkpoint therapy T Walle, S Bajaj, JA Kraske, T Rösner, CS Cussigh, KA Kälber, LJ Müller, ... medRxiv, 2021.12. 08.21267430, 2021 | | 2021 |
| Learning Canonical Cellular Environments from Spatial Transcriptomic Data via Optimal Transport S Mani, D Haviv, RZ Kunes, D Pe’er | | |
| Prediction Focused Topic Models Via Vocab Filtering R Kunes, J Ren, F Doshi-Velez | | |
| Supervised Tumor Cell Subtype Identification via SCAN R Kunes, S He, Y Xiao, S Tavaré, D Knowles | | |
