Vineet Bafna

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Pavel PevznerProfessor of Computer Science, University of California at San DiegoVerified email at eng.ucsd.edu
Paul MischelStanford UniversityVerified email at stanford.edu
Vikas BansalAssistant Professor, University of California San DiegoVerified email at ucsd.edu
Sorin IstrailBrown UniversityVerified email at brown.edu
Ali BashirGoogle Accelerated Sciences, Google Research & Dept. of Genetics and Genomics Sciences, Icahn SchoolVerified email at google.com
Viraj B DeshpandeUniversity of California-San Diego, Illumina Inc.Verified email at eng.ucsd.edu
Giuseppe LanciaUniversity of UdineVerified email at uniud.it
Dan ZhouDepartment of Pediatrics, University of California San DiegoVerified email at health.ucsd.edu
Bjarni V. HalldorssondeCODE genetics/Reykjavik UniversityVerified email at ru.is
R RaviCarnegie Mellon UnviersityVerified email at andrew.cmu.edu
Samuel H PayneAssociate Professor, Brigham Young UniversityVerified email at byu.edu
Natalie CastellanaCEO, Abterra BiosciencesVerified email at abterrabio.com
Kelly A. FrazerUniversity of California, San DiegoVerified email at health.ucsd.edu
Steven P. BriggsDistinguished Professor of Cell & Developmental Biology, UC San DiegoVerified email at ucsd.edu
Roded SharanTel Aviv UniversityVerified email at post.tau.ac.il
Nathan EdwardsDepartment of Biochemistry and Molecular & Cellular Biology, Georgetown UniversityVerified email at georgetown.edu
Sangwoo KimDept. of Biomedical Systems Informatics, Yonsei University College of MedicineVerified email at yonsei.ac.kr
Russell SchwartzProfessor of Biological Sciences and Computational Biology, Carnegie Mellon UniversityVerified email at andrew.cmu.edu
Banu DostGoogleVerified email at google.com
Shibu Yooseph, Ph.D.University of Central FloridaVerified email at ucf.edu

Vineet Bafna

Professor, Computer Science & Engineering, University of California, San Diego

Verified email at cs.ucsd.edu - Homepage

Bioinformatics Computational Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
The sequence of the human genome JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ... science 291 (5507), 1304-1351, 2001	18108	2001
An integrated map of genetic variation from 1,092 human genomes 1000 Genomes Project Consortium Nature 491 (7422), 56-65, 2012	7066	2012
The diploid genome sequence of an individual human S Levy, G Sutton, PC Ng, L Feuk, AL Halpern, BP Walenz, N Axelrod, ... PLoS biology 5 (10), e254, 2007	2076	2007
The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families S Yooseph, G Sutton, DB Rusch, AL Halpern, SJ Williamson, ... PLoS biology 5 (3), e16, 2007	940	2007
Human beta-defensin 2 is a salt-sensitive peptide antibiotic expressed in human lung. R Bals, X Wang, Z Wu, T Freeman, V Bafna, M Zasloff, JM Wilson The Journal of clinical investigation 102 (5), 874-880, 1998	729	1998
InsPecT: identification of posttranslationally modified peptides from tandem mass spectra S Tanner, H Shu, A Frank, LC Wang, E Zandi, M Mumby, PA Pevzner, ... Analytical chemistry 77 (14), 4626-4639, 2005	684	2005
Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding KJ McKernan, HE Peckham, GL Costa, SF McLaughlin, Y Fu, EF Tsung, ... Genome research 19 (9), 1527-1541, 2009	682	2009
Genome rearrangements and sorting by reversals V Bafna, PA Pevzner SIAM Journal on Computing 25 (2), 272-289, 1996	669	1996
The dog genome: survey sequencing and comparative analysis EF Kirkness, V Bafna, AL Halpern, S Levy, K Remington, DB Rusch, ... Science 301 (5641), 1898-1903, 2003	666	2003
Sorting by transpositions V Bafna, PA Pevzner SIAM Journal on Discrete Mathematics 11 (2), 224-240, 1998	562	1998
Integrated proteogenomic characterization of human high-grade serous ovarian cancer H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ... Cell 166 (3), 755-765, 2016	559	2016
De novo somatic mutations in components of the PI3K-AKT3-mTOR pathway cause hemimegalencephaly JH Lee, M Huynh, JL Silhavy, S Kim, T Dixon-Salazar, A Heiberg, E Scott, ... Nature genetics 44 (8), 941-945, 2012	545	2012
A multidimensional chromatography technology for in-depth phosphoproteome analysis CP Albuquerque, MB Smolka, SH Payne, V Bafna, J Eng, H Zhou Molecular & Cellular Proteomics 7 (7), 1389-1396, 2008	544	2008
Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer GC Hon, RD Hawkins, OL Caballero, C Lo, R Lister, M Pelizzola, ... Genome research 22 (2), 246-258, 2012	466	2012
Integrative annotation of variants from 1092 humans: application to cancer genomics E Khurana, Y Fu, V Colonna, XJ Mu, HM Kang, T Lappalainen, A Sboner, ... Science 342 (6154), 2013	369	2013
Cognitive computing DS Modha, R Ananthanarayanan, SK Esser, A Ndirango, AJ Sherbondy, ... Communications of the ACM 54 (8), 62-71, 2011	361	2011
Identification of post-translational modifications via blind search of mass-spectra D Tsur, S Tanner, E Zandi, V Bafna, PA Pevzner 2005 IEEE Computational Systems Bioinformatics Conference (CSB'05), 157-166, 2005	351	2005
A 2-approximation algorithm for the undirected feedback vertex set problem V Bafna, P Berman, T Fujito SIAM Journal on Discrete Mathematics 12 (3), 289-297, 1999	343	1999
HapCUT: an efficient and accurate algorithm for the haplotype assembly problem V Bansal, V Bafna Bioinformatics 24 (16), i153-i159, 2008	305	2008
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel O Delaneau, J Marchini Nature communications 5 (1), 1-9, 2014	301	2014

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