Vineet Bafna
Vineet Bafna
Professor, Computer Science & Engineering, University of California, San Diego
Verified email at cs.ucsd.edu - Homepage
Title
Cited by
Cited by
Year
The sequence of the human genome
JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ...
science 291 (5507), 1304-1351, 2001
181082001
An integrated map of genetic variation from 1,092 human genomes
1000 Genomes Project Consortium
Nature 491 (7422), 56-65, 2012
70662012
The diploid genome sequence of an individual human
S Levy, G Sutton, PC Ng, L Feuk, AL Halpern, BP Walenz, N Axelrod, ...
PLoS biology 5 (10), e254, 2007
20762007
The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families
S Yooseph, G Sutton, DB Rusch, AL Halpern, SJ Williamson, ...
PLoS biology 5 (3), e16, 2007
9402007
Human beta-defensin 2 is a salt-sensitive peptide antibiotic expressed in human lung.
R Bals, X Wang, Z Wu, T Freeman, V Bafna, M Zasloff, JM Wilson
The Journal of clinical investigation 102 (5), 874-880, 1998
7291998
InsPecT: identification of posttranslationally modified peptides from tandem mass spectra
S Tanner, H Shu, A Frank, LC Wang, E Zandi, M Mumby, PA Pevzner, ...
Analytical chemistry 77 (14), 4626-4639, 2005
6842005
Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
KJ McKernan, HE Peckham, GL Costa, SF McLaughlin, Y Fu, EF Tsung, ...
Genome research 19 (9), 1527-1541, 2009
6822009
Genome rearrangements and sorting by reversals
V Bafna, PA Pevzner
SIAM Journal on Computing 25 (2), 272-289, 1996
6691996
The dog genome: survey sequencing and comparative analysis
EF Kirkness, V Bafna, AL Halpern, S Levy, K Remington, DB Rusch, ...
Science 301 (5641), 1898-1903, 2003
6662003
Sorting by transpositions
V Bafna, PA Pevzner
SIAM Journal on Discrete Mathematics 11 (2), 224-240, 1998
5621998
Integrated proteogenomic characterization of human high-grade serous ovarian cancer
H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ...
Cell 166 (3), 755-765, 2016
5592016
De novo somatic mutations in components of the PI3K-AKT3-mTOR pathway cause hemimegalencephaly
JH Lee, M Huynh, JL Silhavy, S Kim, T Dixon-Salazar, A Heiberg, E Scott, ...
Nature genetics 44 (8), 941-945, 2012
5452012
A multidimensional chromatography technology for in-depth phosphoproteome analysis
CP Albuquerque, MB Smolka, SH Payne, V Bafna, J Eng, H Zhou
Molecular & Cellular Proteomics 7 (7), 1389-1396, 2008
5442008
Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
GC Hon, RD Hawkins, OL Caballero, C Lo, R Lister, M Pelizzola, ...
Genome research 22 (2), 246-258, 2012
4662012
Integrative annotation of variants from 1092 humans: application to cancer genomics
E Khurana, Y Fu, V Colonna, XJ Mu, HM Kang, T Lappalainen, A Sboner, ...
Science 342 (6154), 2013
3692013
Cognitive computing
DS Modha, R Ananthanarayanan, SK Esser, A Ndirango, AJ Sherbondy, ...
Communications of the ACM 54 (8), 62-71, 2011
3612011
Identification of post-translational modifications via blind search of mass-spectra
D Tsur, S Tanner, E Zandi, V Bafna, PA Pevzner
2005 IEEE Computational Systems Bioinformatics Conference (CSB'05), 157-166, 2005
3512005
A 2-approximation algorithm for the undirected feedback vertex set problem
V Bafna, P Berman, T Fujito
SIAM Journal on Discrete Mathematics 12 (3), 289-297, 1999
3431999
HapCUT: an efficient and accurate algorithm for the haplotype assembly problem
V Bansal, V Bafna
Bioinformatics 24 (16), i153-i159, 2008
3052008
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
O Delaneau, J Marchini
Nature communications 5 (1), 1-9, 2014
3012014
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